Protein Alignment Dnah3 and Dnhd1

DIOPT Version :9

• Sequence 1: NP_647937.2
• Gene: Dnah3 / 38586
• FlyBaseID: FBgn0035581
• Length: 4385
• Species: Drosophila melanogaster
• Sequence 2: XP_008758037.1
• Gene: Dnhd1 / 690115
• RGDID: 1584052
• Length: 4758
• Species: Rattus norvegicus
• Alignment Length: 5318
• Identity: 1052/5318 - (19%)
• Similarity: 1858/5318 - (34%)
• Gaps: 1549/5318 - (29%)

  Fly    27 TLHLPRVS----QAQK--------------KGEKRQLNDCPFYNLTYGFDQ--LPLDPVKEFLQE 71
            ||.:|.||    |.||              :..::|||.|    |.:..::  :||.|
  Rat    11 TLPMPSVSCRPGQTQKPKDWNWHLDPELWARSVRQQLNTC----LRFILEERKVPLSP------- 64

  Fly    72 KISHMQT--DKIVGHCNREFDFHRYDLDNVKDEYDECDDDSLQELQLEDIIMPEQFEMLRDAKDH 134
            :|....|  ..:.| |:.....|.:|          |.:   ::..|:.::..||..||......
  Rat    65 EIPWFDTLQSGLAG-CSCSGQEHSWD----------CQE---KQEHLKAVVESEQRNMLELLLSE 115

  Fly   135 LYNFDST-----ACNQFPWIDKWMTGVRPSEQEI----YEMTSHLLEIYCNRRVRIFYPGCGTSS 190
            |.:..|.     :|..:.::.. :.|:.|..:|:    .|:...|.::||
  Rat   116 LKSLFSAVLQDGSCEAWHYLHA-VLGLLPPYREMLAGQLELLPFLEQLYC--------------- 164

  Fly   191 SLWTNQLRRQHGSPSELIGAYRTPSARHMRVNNMRGPPKKEKFTAGDHYAFRTPQECRNELMRVG 255
              |..::  |.....:|:.|.           :...||......:..|.      :|
  Rat   165 --WAPKV--QAWLQLDLLDAI-----------DKAFPPDSSLLHSSSHV------DC-------- 200

  Fly   256 KIIDELIEPVLKAAEHKIGHGLTKYPDPPSCKDNTNRILRSAGILVGKKKNCYVGKCR---IHRK 317
                   .|.:|           ::...|.|         ||         |...|.|   ..:|
  Rat   201 -------SPWMK-----------RFHRGPPC---------SA---------CPFVKARWDQQQKK 229

  Fly   318 DFATNEEFLRCLKRMEATHFPYMQPLQPVDPDDQKIKMLAKYRVELARAEKLFTLKIQKRYQCLL 382
            :.||   :||.|...|..|                  .|.....|:|..|..:           |
  Rat   230 ELAT---WLRPLTLPELQH------------------CLGIVGAEVALEETPW-----------L 262

  Fly   383 KSMSIVQLA-------TYPSHLI-------------------RKAFRRINPRSALLQDAYQFIVK 421
            .|:|::.||       .|.|..|                   .||.:|.:||:::|:...:.::
  Rat   263 DSLSLLPLALATDIPVQYESSDIGHAEPAPAGRKPQLASEAPEKALKRKSPRTSILRSQVKSLL- 326

  Fly   422 EKRDWPKLPPEVILMDYLFV-GDRGVRQDLAILIIVCLIDLQEDFRHYVKRSF--LNYLLSSNME 483
             |.||.:   :.|...||.| .||.......:::....::.:    ||:...|  |:.......|
  Rat   327 -KGDWSQ---KKIHFLYLNVASDRHFNPYKLVVVPPNKVNPE----HYIFSPFGILHIHPVEGSE 383

  Fly   484 RRRL-----------QLEREPPEFPILTISPPVSWRSNL-LRGKARIGEVLMTTHPTVQALNRLW 536
            ...|           :|:|.|.....|.......|:.|: .||..|| :..:.||
  Rat   384 TMSLATWHRDTALWHELQRIPFFKNCLLRKALTCWKKNVRFRGLHRI-QTFLKTH---------- 437

  Fly   537 HDLYEDLVVVDLGQLLLAQRPLDADTVQVFIEKSCADVRDLLLNDWLPRCADLMNEMRGTWKDLV 601
                          ||||.....|.  .:.|.:...:.|.:   .|||:..|....:|    ||.
  Rat   438 --------------LLLAIPHFGAG--MLHINRLLQEFRSV---SWLPKEPDKSYVLR----DLK 479

  Fly   602 PMSGKYGGRA-----------AMLFRCIHS---AMSRHLNSLI--------SKSINYLFKVLCAF 644
            ....|...||           |.:.:.||.   .|.:.|...:        |:...||.:.||
  Rat   480 KAIAKENHRALRVLCHFLNLCASILQLIHEDTYQMQQGLQERVQNWNRIRKSQGSIYLQRTLC-- 542

  Fly   645 KGGNRIEKYSMFDAKLKR----IPLMTLIASVVGAHFDHEPINMGPGVRPASNIYVYDEDD---- 701
               ..:||      |||:    :..:.:.|.::....             ..|:....||:
  Rat   543 ---RHLEK------KLKQAETWLSKLGMFARLIDYMI-------------CQNLVSILEDEITSF 585

  Fly   702 -ADPFQQPQVNQFVENVPDIDDVAQFELDHSNKLYIYPYMQELPRIFTEHFKSILAVGYEIPRLE 765
             |:..|.|:.|.|:        |:|...|.:.:|...|.::.:.:...:..:||.....::.:..
  Rat   586 IANNLQAPRQNPFL--------VSQLVFDDNGQLSPMPRVESIIQSLIKSLQSIKTSALKVMQST 642

  Fly   766 FVMSGGEPETKGFLHFIDEDHVDFLELCE--------KVEQIVKV----------NWQGVHV--- 809
            .:.:..||       ...||:.|.....|        |....|::          .|:...:
  Rat   643 DLRTSREP-------LYSEDNKDQDSNTEFPMPKFHGKSSDAVRLFCGPNVGYVWPWKSHAITNV 700

  Fly   810 -----------YLKPVYKYY-------FGLFQKLILPMVQKVWTENNLPELGAVQELLKKLQAVS 856
                       ||.|.|.:.       .|:.|.|   .||:...|:...|   |||...|.|.|.
  Rat   701 LEVRGHRLRGQYLHPNYDHVQEDLDKNAGIQQAL---AVQQALLEDMRQE---VQEFCNKQQWVE 759

  Fly   857 DTTYYLR----------------DFIPL----------------------NLFMLDNRHVKLSLR 883
            |...:|:                |::.|                      .|.:|..|.|:..|.
  Rat   760 DIYEFLKAWNSQKLEDLRGSPISDYVKLVRKLKNWQERVSNMPVELLTKTKLLLLSGRDVQEELE 824

  Fly   884 MYVREIYDFIIDFYKALNWNENRAICEELEEM-----------------SMKAGERPEETPEVVA 931
            ..:..:...|::..|...|:.|:.:.::|.|.                 |.|..|..|:...:..
  Rat   825 SKLNNLRKNILEQVKNECWSRNQQLMKKLTEFLRVFQTINLDIHAIAQCSQKLNEANEQYCHLEE 889

  Fly   932 LQNYINDCREMRIFAIKDEIKNVLKRVVFLLTHTYL----------------SSDELHLNSRTFI 980
            ...|:.        ::.|.|:|  ..|:|:..:..|                ...|..|:.|..|
  Rat   890 QVEYVR--------SLHDLIRN--HCVLFISENETLDIALLDLWEAFQFERSQVSEFLLSKRHAI 944

  Fly   981 LPGELEEVLDLSAARLAVVRDNLELALRERRMEFEKLLAQEKRTMDGFRIREIRDVLTLEELKER 1045
            :|    ::..|.||.||.:...|..||....|:    .:||:|:.:       :.:..||
  Rat   945 VP----KLQQLMAAALAELEGLLVKALSGPFMD----PSQEQRSTE-------QQLGALE----- 989

  Fly  1046 VDTVDLLFTTIEN---LSREAKAINTEETLLQIDVSA-FPLLAEIIEKMEPIEKLWKTSYEFEKD 1106
                :....|:.|   |....::....:|.:....|. .|::.:        :::|:......::
  Rat   990 ----NQFLNTLSNFNALCYAYRSFTGHKTTMSPPASGNRPIVLQ--------QRIWRLYRIIHEN 1042

  Fly  1107 YLIWMFERFECLNADGVREQVENMHKIMYKLSRQLA-YNPVAKRAAEQMRMKIEKFRVYLPVLDS 1170
            :..|....|...|....||:.........:|...|. .:||.:|.   ||| :|:||.|||:|..
  Rat  1043 FSEWKCVAFSKFNLSMAREKTNAWLTEAARLGTALGQQSPVLQRC---MRM-LEEFRAYLPLLIK 1103

  Fly  1171 ICRHGLEKRHWDQISKILGRKVNPKL-FPTLKDMIDVDIMSILPQLEEIANAAGKEYDLNNGLRI 1234
            :....|:..:...:.:.||......| ..||..:::..::....::.::.....:.......|:.
  Rat  1104 LGSLELQDVNTQSLLRALGLGGLQSLDLLTLGRLLNCPLLEFADRINQVWQRDKERIHAQEILQQ 1168

  Fly  1235 MQADWRDVMFEVLQY----------------------------RDSDTHILASLDDIQTLLDDH- 1270
            ||..|......:|.:                            :||.|.:|:....:|..:.:.
  Rat  1169 MQQYWEGRQLRLLNFILQVPYRPPTSERSKRPALRSPQWELVGKDSGTFLLSDYSSLQDAIQNSL 1233

  Fly  1271 --IMRTQAMKRSPFITALGSKADDWEARLLLIQNIIDAWTQVQITWMYLEPIFSSEDIMRQMPLE 1333
              :.:..|:::|   ..|...|.:|...:..:..:::.|...|..|::|..:....:|  :.|..
  Rat  1234 QALFKILAIQKS---GQLHKIALEWVTIMYDLGALLEVWVSFQQKWIFLNKVLHEMEI--EFPAA 1293

  Fly  1334 GRN--FKAVDKLWRKIMKHTLKDRHVMA-------------ATEYPEMLEVFTKAIEDLETVTKG 1383
            ..|  ||.:|..:|.:|:.::.|..|::             ......:|:|   ...:||.:..|
  Rat  1294 ELNARFKVMDDQYRTLMRISVADPMVLSLIVPNTKRSPYFQGQHLQHLLKV---GSVELEAIIMG 1355

  Fly  1384 LNTYLEQKRLFFARFFFLSNDELLEILSETKDPMRVQPHLRKCFEGIGSLTF------------- 1435
            |...|...|..|.|.||||:.||:.:|:...|....:|..::||..|.::.|
  Rat  1356 LEDVLYGVRANFPRLFFLSDSELVALLASPLDTSEAKPWAQRCFPYIKAVNFRSKSTNKENNDKD 1420

  Fly  1436 -DDNMEIVEMVS-----DEEERVALVRKINPQLANGL--VEMWLKEVEMVMLDSV---------- 1482
             ..::|.||.:|     .||.::.....:.|.|...|  :|..|:.|.:.:|.|.
  Rat  1421 SKSSIETVETISVLGACGEEVKLQEPLPLYPDLPKWLASLETCLRLVVVNLLQSCVATRLAQGPS 1485

  Fly  1483 ----------KEQMR-----EAWEDYAMVERISWVVSWPGQVVQGISCMAWTYEVEEA-IETKEL 1531
                      :.||.     :.|.|...|        :|.|.:.....:.|..|:||| :|:|.:
  Rat  1486 LIKALKAMPQQRQMSTQLYVQHWLDAVQV--------FPWQCILVAEEIVWRAEMEEALLESKTM 1542

  Fly  1532 P-AYLEKSNLQIADLVQLVRTDLQA-------GVR--IAVEALIVLDVHDRDVVKYLTDCRITNI 1586
            . :.:...||::  |||.:|:...:       .||  ....:|:|..|..||:.:.|...:::::
  Rat  1543 RLSSVHVRNLEV--LVQFIRSQRSSQGEQPLPSVRQTSLFSSLLVKAVTHRDIAQLLEKNQVSDL 1605

  Fly  1587 QDFDWISQLRYYWKVNEKN--EDWVCVSMVVTDVE------------------YGMEYLGNLPRL 1631
            .||.|:.|::|:...:..|  ....|::...:..|                  |..||:|  |:|
  Rat  1606 TDFHWVRQIKYHLGSSHLNLKSPLQCLTTTASTEEPSVSPAACWIDVLGRSFLYNYEYMG--PKL 1668

  Fly  1632 VVTP--LTDRCYRTLMGALKLCLGGAPEGPAGTGKTETCKDLAKAVAKKCVVFNCSDGLDYKALG 1694
            ...|  :.:|....|:.||.....||..|..|.||.||...||.|:.::.|:..|...::::.|.
  Rat  1669 GPLPSLMHERQVFILLLALNEVAYGAVLGRDGLGKAETVNSLAWALGRQLVIMPCLPQIEFRCLS 1733

  Fly  1695 KFFKGLAQSGAWACFDEFNRIELEVLSVVAQQ------------------ILTIQRAIGRKVVKF 1741
            .:..|..|.|||...:..:::...:||.:.|:                  |.||.......:...
  Rat  1734 NYLNGALQCGAWLLLENVHQLPSGLLSALGQRLDELHHLYAPLYQKASKNISTINPTKHLLLGAG 1798

  Fly  1742 FFE--DTMLKLDPTCSI-FITMNPGYAGRTELPDNLKVLFRTVAMMVPDYAMIGEITLYSNGFDM 1803
            |||  ...::|...|.: |.:::|      ::|.||.:|.|.||:..||...:.|:.|...|...
  Rat  1799 FFEKHQVSVRLGFGCFLTFHSLSP------DVPANLHLLLRPVALAFPDLQRVAELQLLGAGVRD 1857

  Fly  1804 ARNLSQKIVQAYKLCSEQLS--------------------------SQSHYDYGMRAVKSVLLAS 1842
            |..::.::.:.:.|..|.:|                          ::|...:.:.|.:     .
  Rat  1858 ASRMATRLSKLFSLERELVSGTLPSRLPLLKQVLENTIETLNASEENKSQQPHNLAAAE-----E 1917

  Fly  1843 ASLRRLYVDLPEPEIVLRAIVD-VNLPKFLEQDISLFIGIYMDLFPGVELPMPQRGDILKWLHI- 1905
            |:|.|..:..|     |..|:| :.|.|..|    |..||:.:....:..|:..|  ::|.:.:
  Rat  1918 AALLRALLHSP-----LFTILDGLRLQKLQE----LLCGIFPNASHVLAEPVCHR--LMKSVVVE 1971

  Fly  1906 NLADRNLQATPWYLEKILQIYEMLLVRHGLMIVGGSMGGKTTAYQVLAQTLRNVSTDEEATLKEF 1970
            .|....|..|...|..:.|:.|.|....|::::|.:..||:|.::.|.:....::..|..:.|.|
  Rat  1972 ELQQLGLFPTLNTLTSLEQLSEALSKASGILLLGTAGSGKSTCWKSLFKIQNRLAAMEHTSTKGF 2036

  Fly  1971 PVTFRI-INPKAITMGQLYGRFDPVSHEWYDGVLAKTF-----------REQVQGPKGERAWVMF 2023
            .....: :.|..:|..:..|..:..|  |..|:..|..           .|:.:...|.:.|::.
  Rat  2037 QSVETVHLYPSVLTSQEYLGWSEGSS--WRYGIFTKLLHAAPYCKTVGSEEKSERFTGIQQWIIC 2099

  Fly  2024 DGPVDAVWIENLNTVLDDNKKLCLMSGEIMQMTKLMNMMF--EPADLEQASPATVSRCGMIYMEP 2086
            ||..:..|::::..:|.|..:|.|.:|:  |:.:.:...|  |.|:....||..:.||.:::...
  Rat  2100 DGAPNHAWLDSITCLLADPPQLSLPNGQ--QIARPLGTFFLIEVAEAAGMSPTVLGRCALVWCCG 2162

  Fly  2087 SQLGWRALHKSFINVLVNKVGLGDIYMTLFEDMTEWLVPAALEFLPQ---------------CKQ 2136
            .|. |:::....|..|.::..|....:..|..:.|.|||:...||.:               |..
  Rat  2163 EQT-WQSMLSVLITSLPHEYHLQQETIVQFNHLAEVLVPSVFRFLTRIGASSQLQVHGHQAVCPG 2226

  Fly  2137 MLELSPIYQ-YQTFSRFFLHFLEKHKQFNQAWFQ------------------------------- 2169
            :.|::.:.: .:......||..|:.|...:..|.
  Rat  2227 VAEVTSLIRILRALLDPHLHLFEEEKPHTKEDFSGTDLVTQNFISSKSKAQSDRISVYKKERRHL 2291

  Fly  2170 ---QMFLFCFAWAYCSALTGQGQKTFDALLRKVIYGSNENFPKPK--------YFSLNRGQMFPE 2223
               ..|||...|.:.:.|:.:....||..:||.| .|..|:|:|.        :.:|..|.:.|.
  Rat  2292 LAISSFLFAIIWGFGAHLSSRHWPLFDDFMRKAI-SSLPNYPEPPPSALVFDLHINLEDGTLVPF 2355

  Fly  2224 KLLFLDYRFDEAENWWTWQKSDDSASTTSNFPENAQISELIVPTKETGYISYWQEFCISKSYAML 2288
            ...:|               |.....:..:|..::|:.:|:          |..:..:|....:|
  Rat  2356 TGQYL---------------STHVKRSLGSFQPSSQVEQLL----------YVVDLLLSNGQPVL 2395

  Fly  2289 VVGPTGTGKSAIITSNLLAMPKFANLVNVINFSARTSAQMVQDTIMSKL--DRRRKGVF-GPSLG 2350
            :.|...|||||.:  .:|..|....:...|| .|..||.:  ..::|:.  .:.:.|.| ||...
  Rat  2396 LAGEIATGKSAFV--EVLVEPNHPTIHRPIN-PALNSAHL--RNLLSRAVHGQTQAGSFVGPHQD 2455

  Fly  2351 KKCTV--FCDDVAMPSKDTYGSQAP-LELLRTWLDHGYWSDLVDTTKIELVDMTL-MCAMGTLGG 2411
            .|.::  ..:|:.:.:.|...|..| ||.||..::...:|.  :|.:::.:..|: ..|..|:.|
  Rat  2456 SKGSILFLMEDLHLAAFDPEKSCQPVLETLRQAMEGTIYSH--NTLELQTLQPTVNFLATATVPG 2518

  Fly  2412 --SNFIFPRLYRHMFVVAVDSF-EDSTIVRIFTTIGDWHFSKGYP--EKVALLSRGLSEAMVSVY 2471
              ...:.|||||...|:|::|. :|:.:.|...:|..|  .:.:|  |:...|:|.|..|.|..:
  Rat  2519 YSERPLCPRLYRLFTVLALNSMTQDTLLSRHVPSIQAW--LERFPSVEREHTLARALVRASVEAW 2581

  Fly  2472 RDAIRSFLPTPAKSHYSFSLRDITRVFQGIVMVPPKR---------------------------- 2508
            ......|:|:|...||.||...::.:...:.::|.:.
  Rat  2582 EAVCNCFMPSPLHPHYRFSPHSVSHILGSLQLLPTRMGSRGFVDSFHHQEHLRRVSGLRGTRLTI 2646

  Fly  2509 MPDPEKLGRLWAHETYRVFYDRLVDQQDRDR------LLVMA------VDACKSNLRFPLEQAFG 2561
            |.....:.|||.||..|.|.|||  ..||:|      ||.:|      |...:|..|...|:...
  Rat  2647 MMSMRVMVRLWLHEAQRTFCDRL--DSDRERSHCVKLLLEVAQRVFCSVPGSESLARVCEEEEVE 2709

  Fly  2562 E----RIEPGEKL-----------------------------------------------TDN-- 2573
            |    .:|..|::                                               |:|
  Rat  2710 EEKVPEVESEEEIAHWEILSNSDSGSEEEEDPFGLQATTGSFLSESGLAPLPIKSVNKENTENVS 2774

  Fly  2574 -------DLRN-------------------------------LFY----------------GNYM 2584
                   |:||                               |||                |:..
  Rat  2775 QVAQQLEDIRNSNSKLQSETHKRKWQRAPQTDLSLPLLLPVLLFYPQENPSDLVFSLELTLGSNF 2839

  Fly  2585 EPDAEPKFYDEGDTYEKLEKLMKYYLREYNSFSSTPMDLVMFRFAIEHVSRVSRVLQMPRGN-IL 2648
            |   .|..|.|.. :|.|||.:.....:....|    |.......::||:|:.|||..||.: :|
  Rat  2840 E---SPNLYLERQ-WENLEKQLAASAVQLKMNS----DFAQCHVMVQHVARLVRVLARPRQHGLL 2896

  Fly  2649 MVGMGGSGRRSSARLAAYIADCRLMTVQVSKSYTITDWRDDLKKILMSASFN---LNHTVFLFSD 2710
            :....|:||.::..||:.|...||..:.......:.       :.|..||::   ||.:|.|...
  Rat  2897 LSEFRGTGRNTAIILASNICQARLFHLPFESEEAVF-------QCLRDASWHAGVLNQSVALLVP 2954

  Fly  2711 AQATDEGYVEDINGILNTGDLPNLYQLEDKATI-----MENMAN---VAKQ--LGKILDTLPSEV 2765
            .|.....:.: :..:..:|..|:.|...|...|     .||:.|   :.|.  |.:....:.|.:
  Rat  2955 DQVNVATFCQ-LLALATSGSFPDQYTEADLDNIEEHLPKENLVNKYSIKKDTVLNRFYQQVCSNL 3018

  Fly  2766 YAYYI---DRIREQLHIALAFSPIGDSFKERIRVYPSLINCCTIDWYMPWPEEALSRVGVYFVSS 2827
            :.:::   |::::||...|..|.:             .:...::|.|.||.:.:|.||..:.:.:
  Rat  3019 HMFFLMEDDQVQKQLPSTLFLSLL-------------QLTIASVDRYEPWDQASLVRVAQFRLEN 3070

  Fly  2828 MNLNRPHGEETQEPVQSKDAADPDEEEVRRETVGVEREQTQLEADLVDCVMYFHQSVVDASEKCY 2892
                     :...|:.......||.:.:......:       .|.:.....|:||.:..|
  Rat  3071 ---------DQSLPLDDGSLKCPDFKILIPNVANI-------MARIHGSSAYYHQHMCPA----- 3114

  Fly  2893 LELNRRNYVTPSAYLELLKAFRTFYTRKLDEITRLRDRYTTGLEKLDFAAGQVGEMQTNLYDLQP 2957
            |.|     |||..:.:.|..|.....:.:.::.....|..:.|:.|.....:.....:.|.||:.
  Rat  3115 LPL-----VTPRTFQDFLDMFLQQQQQMVLQMRMRARRIQSALKTLRLLVERHSTQTSMLTDLEK 3174

  Fly  2958 KLK-------VLSEETDRIMVNIERETAEAEKKKEVVGADEAAANEAAAAAQAIKDDCETDLAEA 3015
            :||       :...:.::..:..:::.||.:..:.::  :.......|..||
  Rat  3175 QLKGSYKNVGMYQGQLEQCKILYKQKMAECQHLESLI--ENLTRQHDALKAQ------------- 3224

  Fly  3016 IPAMEAALE--------ALNTLKPADIFIVKSMKNPPYGVKLTMEAVCVIRGIKPDRKPDPSGHM 3072
               .||.||        .|:.|:.||...::|.:.||..|....:|:|           |...|
  Rat  3225 ---QEAFLEQMGKAFVGPLSQLRVADFEEIRSYRAPPESVVKVTDALC-----------DLFHH- 3274

  Fly  3073 VEDYWGPSMRMLSDMKFLDSLKTFDKDNIP----PPIIKRIREKYIADRDFVPEKIKAASMACEG 3133
             |..|..:.::|....|...|..|.|:.:.    ..:.:.:|...::|.......|.||::|.
  Rat  3275 -ETGWSSAKQLLCTEDFYQELVFFPKEKLMDSELAKLSQALRAPGMSDASLRSVSIPAANLAV-- 3336

  Fly  3134 ICRWVRAMDVYDKVARIVMPKKAALAEAEGELSQQMEKLNAKRAELQVILDKLQKLNDFFAEKSR 3198
               |:||:..|....|..:|....|.:.:..|:::..:|...:.:...:|.:.|.|.
  Rat  3337 ---WLRAVLRYGLAQRRGLPTGLLLRQVDATLAREQARLGQFQFQAHDLLQQTQFLT-------- 3390

  Fly  3199 EKKRLED---EIDNCEKKLNRAE-------KLLGGLGGEKTRWSEAAKNLHESISNIVGDVLLAG 3253
              |:|||   ..::..:.||:|:       .:...|......|:...:.|.|....:.||.||..
  Rat  3391 --KKLEDAQLSHNHVVETLNQAQCGHFHRWPMKSALLTPMHMWTTQLQKLQEQAKTVFGDALLCS 3453

  Fly  3254 GCTAYLGYFTTEYRVNILDDWNALC------------------------KRKHIPSSETFSLATT 3294
            ....|||.|..:.|..:|:.|.:||                        |...:|:...|.:.|.
  Rat  3454 AAIVYLGPFPPQRRQELLEKWLSLCQGFEEALDPDDVAQALRQKSVRVSKNPLLPTRTPFRILTL 3518

  Fly  3295 LGHPMTIRAWSLAGLPADNFSVENGIIVT-----NSSRYSLLIDPQVQA-----------NKWIK 3343
            |........|.....|....:...|:::.     :|||:.||:||..||           |||::
  Rat  3519 LSCGSEQHQWDRDLKPQAKSARLLGLLLRSHIHFSSSRWPLLLDPSNQAIIWLNPLPPKQNKWLE 3583

  Fly  3344 -----------------------NMEKNNN----------------------------LKVIKQS 3357
                                   .:|..||                            .:..|::
  Rat  3584 QPPKESRAKYHVTNQDSEDETEDELESENNEDEDEVSEQREEHKTEENESEEENKQEEQETEKEN 3648

  Fly  3358 DA-------------------NYMQVL-----EL------AITFGQPVLIENVGEKLD-SNLTPI 3391
            :|                   :|:.||     ||      |...|.|||:.|:...|. ..|..:
  Rat  3649 EAESTSSGSSSSPPSETQCLPSYLTVLSGTDPELGPQLLEAAANGLPVLLTNMELSLGCQELQWL 3713

  Fly  3392 L-EKNVIKHKGGLFIKSGDQMIEY-NPNFRLYITTCLRNPRYP---------PEVMVMVTVLNFM 3445
            | :||:|.              .| .|.|.|:::|     .:|         .|::..:.||:..
  Rat  3714 LSKKNLIP--------------PYVQPGFCLFLST-----TFPIHALDRVLGYELLKGLNVLDLG 3759

  Fly  3446 ITEQGLREQLLAIVVAHERPDLQEKKEQLIIESARNRDALYTIESKILEVLSTSEGNVLEDENAI 3510
            :..:.|.||:|..::..|||:|:.:.:.|.:.:|.|.:|:...|.::|.:|...  |.:..:
  Rat  3760 LNMEILEEQMLHEILCRERPELETRWQDLKVRAAENYEAMKADEEQLLVILLRQ--NKMRQK--- 3819

  Fly  3511 NILSSSKILSEDIQEK----QVIAVATE-----IEIDAARQQYIPVSKHSAILFFCISELANVDP 3566
                .|:.|.|.::.:    |:.|...|     :|:.|....|..|:.|...:...:|.|.|:.|
  Rat  3820 ----PSRFLREMVRTQAKICQLNAQGEELDEQKLEVAALWAPYRQVAYHGMAMVEALSSLQNLLP 3880

  Fly  3567 MY-QYSLSWFLNLFVNTILKAPKSDQLSERLKNLNDYFTKSIYTNVCR-SLFEKDKLVISLVMCL 3629
            .: ..|.:|     :..|.:|..|      :|:.:.|..:.:.:::.| .:....:|:|:.|:.|
  Rat  3881 FFCMKSENW-----LAVIRRAIDS------MKSCDSYHGEDLPSHLLRMKIHLARQLLINTVVAL 3934

  Fly  3630 GILVS-----------------QGRVEKAALL--FFLTGGIGYK-TIPPNPLGAWLPDKSWASVC 3674
            |::.:                 ..::|:.||.  ...:...|:. .||.....|||..::|.. |
  Rat  3935 GLIQTPLVGAFGALAMLQVTKKTPKLERLALWPGLLASPSSGHNIQIPGVTRPAWLSSRAWEE-C 3998

  Fly  3675 KAAD-LEGLKNLPQMMETYSDEWHNFYDASNPDQLQLPAPHNTVNDMY-FLIVIKSLRPDKLVPA 3737
            .|.: |.....|...:.::||.|.::...|:......|.|::....:: .||:.:.||||.||.|
  Rat  3999 GALELLSPFAGLRASLASHSDVWQDYLSLSSTVLGPAPGPNSEPLSLFQKLILWRVLRPDCLVGA 4063

  Fly  3738 VRAFITRNLDRSFVEPPPFDLAAS---FADSSPKIPLVFLLSAGSDPMASLF------MFAKQRN 3793
            :....|..|.|...|    ||.|.   |....|..|::.||.....|.|:|.      ..|....
  Rat  4064 LADLTTSLLGRPLDE----DLDAPTMIFDHIQPTQPILILLPPPGHPTATLHPVTVIRKLAASEK 4124

  Fly  3794 MYDKLKTISLGQGQGPRAEKMI---MEAARHGQWVVLQNCHVAISW-----------------MG 3838
            ...:|..|:||.........::   .:|...|.|:||.|||:...|                 :.
  Rat  4125 PQKRLHVIALGSEDWDPVSTVVNTLSQAMLQGHWLVLDNCHLMPFWPRELLQPLQGLLDGAKVVS 4189

  Fly  3839 DLERICNDTTLTDGANH-DYRLW--CTSYPSAVFPVSVLQNSVKMTNEPPKGLRANMHRSFTSDP 3900
            |.|.|....:.|....| |:|||  .::..|...|..:.|:|:.:.......|...:..|..|..
  Rat  4190 DSELIAEPESRTVATVHRDFRLWLIASTEASTSLPGVLTQHSMPVFWNQSLELGRILIDSVDSQQ 4254

  Fly  3901 LMRDKFFTNAFLFSDSANKCWLRGVFALVFFHAVVQERREFGPLGWNIPYEFNESDLKIS----- 3960
            .:..:.||.               .|.|.|.:.::..|:.:|              ||:.
  Rat  4255 ELSTQSFTQ---------------TFPLFFLYGLLVHRQLYG--------------LKLQAHRGR 4290

  Fly  3961 --------LLQLKMFINQSQSIPFRGHVYLTGECNYGGRVTDDKDRRLILSLLNMIYNPNTIEED 4017
                    :||::..:..|.|.|....:.|.....|||.:.|.:||..::||.....||..:
  Rat  4291 WSQVTLTRVLQIQEQLWASLSNPSAALLELAASVLYGGPLRDLEDRETLVSLTGACLNPRNM--- 4352

  Fly  4018 NYALSQSGTYRVPLSPTRLNSIEYVSSFPLSPHPEVYGLHENADINRNVKETNALISGVLLTQTD 4082
                    .:..|.:|      :|:.: .|.|.||:..|....|..               .|..
  Rat  4353 --------NWVQPHTP------QYLLA-TLMPSPELGELDARTDCK---------------AQMH 4387

  Fly  4083 LMASVKASSSGGAKEDPAIAICKQVLKQLPEEFNIDEVSKTY-PVI---YTNSMNTVLRQELIRF 4143
            |:.:.....:.|..|.|...:.::..:.|...  :.:.|.|: |.:   ........|||.|::.
  Rat  4388 LLPTPSEPRTCGLNEGPQAWLLRRQSRALLSA--LRQCSSTWVPTVCGGIVQRKERRLRQRLVQA 4450

  Fly  4144 NRLLSYIRKSLVN----VGK-----AVVGQIAMIP-----ELERTHASMVIGKLPAD-------- 4186
            .:.|..::..|.|    .|:     ||:|..|..|     |.|......::|.|..|
  Rat  4451 KKRLVALQALLTNNRYRSGQCVTPWAVLGPNARPPLEGFLETEVLELKQLVGMLLRDLDCLLQQL 4515

  Fly  4187 ------------------W---LKKSYPSLKPLGS-----YVSDLLARLAFFQEWID-------N 4218
                              |   |.:.:.|..|.|.     ::..|..|.....:::|       |
  Rat  4516 KGKTPCTSSRCAEVAQALWAGRLPQPWRSHAPAGPQLPWLWLRQLSRRGHLLIQYLDSGISENAN 4580

  Fly  4219 GEPMVYWISGFYFTQSFI-----TGVLQN--YSRK--------------NRFQID----MILIEF 4258
            |...::.:|.|...:..:     ..||:|  :|.|              .|.:::    .|.:|.
  Rat  4581 GPERIFHLSAFRHPRRLLLALRWEAVLENSGHSPKLPGHQGSGSGNLPPRRQELNNHPLHIWVEN 4645

  Fly  4259 AVTKFEVQVPGTPDIGAYIRGIFIEGARWNRKTKEVDESFSKVLFDTLPVIYLRPVLKALEDLPR 4323
            ...      |..|.:|..:.|:.::.|.|::....:.:|||.... .||.:.:....:..:|...
  Rat  4646 GPN------PKVPKMGLLLIGLQLQHAAWDQTDGALKDSFSSQPC-PLPPVSVSTQSRGAKDASV 4703

  Fly  4324 STAGGEPETIYDCPVYKTSERRGVLSTTG-HSTNFVMYLQLRCSRKPMHWINR 4375
            |...|    ||.||:|.|    |.|.||. ||.|.:|.|.|.....|...|.|
  Rat  4704 SAGLG----IYSCPLYMT----GPLGTTKLHSKNILMRLPLPTRLSPDTCIQR 4748

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dnah3	NP_647937.2	DHC_N2	1086..1489	CDD:285579	95/496 (19%)
		P-loop_NTPase	1620..1847	CDD:304359	63/275 (23%)
		P-loop_NTPase	1934..2079	CDD:304359	33/158 (21%)
		P-loop_NTPase	2264..2522	CDD:304359	67/297 (23%)
		P-loop_NTPase	2613..2916	CDD:304359	65/319 (20%)
		MT	2929..3272	CDD:289543	74/371 (20%)
		AAA_9	3304..3519	CDD:289547	63/323 (20%)
		Dynein_heavy	3659..4373	CDD:281078	180/845 (21%)
Dnhd1	XP_008758037.1	DHC_N2	1026..1476	CDD:285579	93/469 (20%)
		P-loop_NTPase	1659..1877	CDD:304359	58/225 (26%)
		P-loop_NTPase	2374..2660	CDD:304359	69/304 (23%)
		P-loop_NTPase	2877..3126	CDD:304359	61/295 (21%)
		MT	<3198..3475	CDD:289543	67/322 (21%)
		AAA_9	<3672..3810	CDD:289547	39/156 (25%)
		Dynein_heavy	3987..4746	CDD:281078	180/842 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5245
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810