DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dnah3 and CG3339

DIOPT Version :10

Sequence 1:NP_647937.2 Gene:Dnah3 / 38586 FlyBaseID:FBgn0035581 Length:4385 Species:Drosophila melanogaster
Sequence 2:NP_001036762.2 Gene:CG3339 / 43295 FlyBaseID:FBgn0039510 Length:4842 Species:Drosophila melanogaster


Alignment Length:4576 Identity:1238/4576 - (27%)
Similarity:2041/4576 - (44%) Gaps:858/4576 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   327 RCLKRMEATHFPYMQPLQPVDPDDQKIKMLAKYRVELARAEKLFTLKIQKRYQCLLKSMSIVQLA 391
            :|.:|.:...|..||.|:                      :||.|:.:|...|| ...|.:::|.
  Fly   604 KCFRREQTLFFSRMQLLE----------------------QKLATVLLQAFEQC-HSWMHLLRLT 645

  Fly   392 -TYPSHLIRKAFR----RINPRSALLQDAYQFIVKEKRDWPKLPPEV--ILMDYLFVGDRGVRQD 449
             .:.|.|.|:|.|    |:.|....:.|.         :..:|...|  :|:.|...|       
  Fly   646 LMFGSLLQREAVRPELARVLPHILFIYDT---------EMEQLEDSVGEVLLGYEIRG------- 694

  Fly   450 LAILIIVCLIDLQEDF----------RHYVKR--SFLNYLLSSNMERRRLQLEREPPEFPILTIS 502
                  :..:.|..:|          ..::.|  .|....||..:|    ||.:|..|...|   
  Fly   695 ------LAALPLANNFPPIANAMMWLEQHISRCDEFGAKELSQLVE----QLLKEKSELQTL--- 746

  Fly   503 PPVSWRSNLLRGKARIGEVLMTTHPTVQALNRL-------WHDLYEDLVV-----------VDLG 549
             |:.|.|.|.|..      ::||     .|:.|       ||:..:.|::           .||.
  Fly   747 -PIQWNSLLSRRN------ILTT-----KLSNLQMKIWISWHECVDKLIIQGLDESVLSRSQDLS 799

  Fly   550 QL--------------------LLAQRPLDADTVQV-------------FIEK------------ 569
            ||                    |.|...|..|..|:             :.|:            
  Fly   800 QLHLNFSQVLFTLLKETKYLLALQATGSLSGDLFQLPEPLLTLYGHRDAYWERRIRLIKIGEFYN 864

  Fly   570 -----SCADVR-DLLLNDWLP-------RCADLMNEMRGTWKDLVPMSGKYGGR-AAMLFRCIHS 620
                 .||... .|:.||...       .|..|      ||::       |... .|.:|.    
  Fly   865 GIRSGECAAAELQLIRNDLASIDEHVEVACQQL------TWRN-------YNDELVAGIFE---- 912

  Fly   621 AMSRHLNSLISKSINYLFKVLCAFKGGNR--IEKYSMFDAKL-------------------KRIP 664
             .||.|.:.:.:|...|..:|.:.:..:|  :.:.|::...|                   .::.
  Fly   913 -QSRDLFARLQQSHGNLDAILASMRRWSREPLHQRSLYGRNLLDLRHQQDRVRLRLLQCDETKML 976

  Fly   665 LMTLIASVVGAHFDHEPINMGPGVRPASNIYVYDEDDA-----DPFQQPQVNQFVENVPDIDDVA 724
            |..|:.:.....|::|          :....:|..|.:     ..|.:.|..|:.:.:..:|::.
  Fly   977 LNRLLIANFCLFFNYE----------SQEFQLYSRDLSVQEFIREFPEEQRRQYNKYLASVDELI 1031

  Fly   725 QFELDHSNKL---YIYPYMQE-------------------------LPRIFTEHFKSILAVG--- 758
            ..|:..:.::   |:|..|..                         |.:|.|....|....|   
  Fly  1032 CREVREAMRISLEYLYKEMTATATATTTPTAPPVDPGCSAGMARLVLQQITTPQATSTAGAGASG 1096

  Fly   759 -----YEIPRLEFVMSGGEPETK-----------GFLHFIDEDHVDFLELCEKVEQIV------- 800
                 .:.|..|..:...|.|.:           .|...:::..:|..:.|:.:.:||       
  Fly  1097 APPTANDAPLFEVKLELTETEIRFSPAFDASVENNFQQIVEQLLLDIKQTCDCMPRIVADNAPSE 1161

  Fly   801 --------------KVNW-----------------------------QGVHVYLKPVYKYYFGLF 822
                          ::.|                             |.|...|....|.|   .
  Fly  1162 DDEDDDTATVDYEQELRWEPREDRAQELQERKKKDLELEQEQGDPKPQAVQFNLLAAAKAY---S 1223

  Fly   823 QKLI-----LPMVQK-------------------------VWTENNLPELGAVQELLKKLQAVSD 857
            ||:.     |.|:::                         :||:.:...|.|.      :|...:
  Fly  1224 QKMECTADGLEMLERAIRDALADTVAAASAYAAKFQAYAFLWTQQSSEVLAAC------MQTARE 1282

  Fly   858 TTYYLR--DFIPLNLFMLDNRHVKLSLRMYVREIYDFI--------------IDF----YKALN- 901
            .|:::.  .:..:..|       |..:..| .|::|.|              :|.    |..|| 
  Fly  1283 QTHHVSAGGYAIMETF-------KKEIENY-NEVHDAIDQCENRECINGWLALDIKPLKYGLLNL 1339

  Fly   902 ---WNENRAICEE---------LEEMSMKAGERPEETPEVVALQNYINDCREMRIFAIKDEIK-- 952
               |:.   :|::         |:|::.......|.....:|.|::   ...:|:.||..||:  
  Fly  1340 ACKWSH---MCKKWLLRYVQGTLKELNAFIARGFETLQLHIARQDF---ATLLRVLAIMSEIRER 1398

  Fly   953 -----NV---LKRVVFLLTHTYLSSDELHLNSRTFILPGELEEVLDLSAARLAVVRDNLELALRE 1009
                 ||   ||.::.|| .||....|..|......||.:.:::...|..:        :.||::
  Fly  1399 EPYADNVFKPLKEIMGLL-KTYNVEFEPQLLRGIEQLPQQWQQLKHSSTVK--------QEALQD 1454

  Fly  1010 RRMEFEKLL--------------AQEKRTMDGFRIREIRDVLTLEELKERVDTVDLLFTTIENLS 1060
            .|...::.:              |::.:.|..||:          ...:..|..|.::..:....
  Fly  1455 TRFHQQQRVTALIGLHTCHLQHYARQFQKMPFFRV----------PCPQVYDVCDEVYLRLHRFR 1509

  Fly  1061 REAKAINTEETLLQIDVSAFPLLAEIIE-KMEPIEKLWKTSYEFEKDYLIWMFERFECLNADGVR 1124
            |:.:.......||.|. ...|...:..| ::..:::||......|...:.|....:..::.|.:.
  Fly  1510 RQQRLYTRWARLLDIQ-PPDPATLQFCEVELRRVKQLWDFVRVIESCIVAWHATPWLLIDTDDME 1573

  Fly  1125 EQVENMHKIMYKLSRQLAYNPVAKRAAEQMRMKIEKFRVYLPVLDSICRHGLEKRHWDQISKI-- 1187
            .:.:...:.:..|.:.:............:|..:...|    .:..:....:.:|||.::.::  
  Fly  1574 HECKKFTRDLRTLDKCIREWAPYVHIVGVLRELVASLR----AITELQNPAITERHWMELMQLTK 1634

  Fly  1188 LGRKVNPKLFPTLKDMIDVDIMSILPQLEEIANAAGKEYDLNNGLRIMQADWRDVMFEVLQYRDS 1252
            |..|.|..  ..|..::.:.:......::...:.|.||..:...|..::|.|..:.||:.|:. :
  Fly  1635 LSYKCNKS--TRLAQLLTLQLQHHEEDIKNTVDRAIKEMTVTKVLDEIKATWAHLEFELEQHH-T 1696

  Fly  1253 DTHI--LASLDDIQTLLDDHIMRTQAMKRSPFITALGSKADDWEARLLLIQNIIDAWTQVQITWM 1315
            ..||  |...:::...|||:.|:.|.:..|..|..|..|...|:..|..|..:|..|.:||..|:
  Fly  1697 RPHIQLLKVSEELIETLDDNQMQLQNISTSKHIEYLLDKLTHWQKVLGGIDTLIVNWFEVQRKWI 1761

  Fly  1316 YLEPIF-SSEDIMRQMPLEGRNFKAVDKLWRKIMKHTLKDRHVM-AATEYPEMLEVFTKAIEDLE 1378
            |||.|| .|.||..|:|.:..||:.:|:.:..::....:.|.|| ....:.::|....:....|.
  Fly  1762 YLECIFIGSADIRAQLPADAANFERIDEDFTALLAKVQEVRVVMQVVLRHDDVLAQLLQLQHRLA 1826

  Fly  1379 TVTKGLNTYLEQKRLFFARFFFLSNDELLEILSETKDPMRVQPHLRKCFEGIGSLTFD------- 1436
            ...|.||.|||.|||.|.||:|:|..:||:|||...:|..:..||.|.|:.|..|.::       
  Fly  1827 VCEKALNDYLETKRLAFPRFYFISAADLLDILSNGNNPQVIDRHLIKLFDSILRLQYETNTPNAL 1891

  Fly  1437 -----DNMEIVEMVSDEEERVALVRKINPQLANGLVEMWLKEVEMVMLDSVKEQMREAWEDYAMV 1496
                 :|.|.|..||.:.::.|.:      :..|.||:||:.:...|..::.|..|.|...:...
  Fly  1892 GMHSKENDEYVPFVSFDPDQPAFI------VCGGRVELWLRAIIQQMRSTLHELFRRALRVFGEK 1950

  Fly  1497 ERISWVVSWPGQVVQGISCMAWTYEV-------EEAIE--TKELPAYLEKSNLQIADLVQLVRTD 1552
            .|..|:..||.||....|.::||.:|       ||..|  .|||.   ::...|:..|:.|:..:
  Fly  1951 PRELWLYDWPAQVALCCSQISWTADVNRSFGCMEEGYEGVMKELH---KRQIAQLNALINLLLGE 2012

  Fly  1553 LQAGVRIAVEALIVLDVHDRDVVKYLTDCRITNIQDFDWISQLRYYWKVNEK------------- 1604
            |..|.|..:..:..:|||.||||..:...::.|...|.|.||||:.|..::.             
  Fly  2013 LSPGDRQKIMTICTIDVHSRDVVGKIIASKVDNSLAFQWQSQLRHRWDDDQAGSSSGRASTAISC 2077

  Fly  1605 ---NEDWVCVSMVV-TDVEYGMEYLGNLPRLVVTPLTDRCYRTLMGALKLCLGGAPEGPAGTGKT 1665
               :||  |.:.:. .:..|..|||||..|||:||||||||.||..:|:|.|.||..||||||||
  Fly  2078 GGGDED--CFANICDAEFRYAYEYLGNTSRLVITPLTDRCYITLTQSLRLRLAGATAGPAGTGKT 2140

  Fly  1666 ETCKDLAKAVAKKCVVFNCSDGLDYKALGKFFKGLAQSGAWACFDEFNRIELEVLSVVAQQILTI 1730
            ||.|||.:|:.....|||||:.:|||:.|..:|||||:|||.||||||||.:|||||||.|:.||
  Fly  2141 ETTKDLGRALGVMVYVFNCSEQMDYKSCGNIYKGLAQTGAWGCFDEFNRICVEVLSVVAVQVKTI 2205

  Fly  1731 QRAIGRKVVKFFFEDTMLKLDPTCSIFITMNPGYAGRTELPDNLKVLFRTVAMMVPDYAMIGEIT 1795
            |.||.....:|.|....:.|:|:..||||||||||||||||:|||.|||..||:|||:|:|.||.
  Fly  2206 QEAIKMHKTQFIFMGERISLEPSVGIFITMNPGYAGRTELPENLKTLFRPCAMIVPDFALICEIM 2270

  Fly  1796 LYSNGFDMARNLSQKIVQAYKLCSEQLSSQSHYDYGMRAVKSVLLASASLRRLYVDLPEPEIVLR 1860
            |.:.||..||.|::|.:..|.||.|.||.|.|||:|:||:||||:.:.:|:|.....||.::::|
  Fly  2271 LMAEGFQDARLLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGTLKRDDHSRPEDQVLMR 2335

  Fly  1861 AIVDVNLPKFLEQDISLFIGIYMDLFPGVELPMPQRGDILKWLHINLADRNLQATPWYLEKILQI 1925
            |:.|.|:||.:.:|:.:|:|:..||||.:::|..:..:..|.:...:.:..||....:|.|::|:
  Fly  2336 ALRDFNIPKIVTEDVPIFMGLIGDLFPALDVPRKRVFEFEKTIRRAVNEIKLQPEEGFLMKVVQL 2400

  Fly  1926 YEMLLVRHGLMIVGGSMGGKTTAYQVLAQTLRNVSTDEEATLKEFPVTFRIINPKAITMGQLYGR 1990
            .|:|.|||.:.|||.:..|||..:|.|.:|.|         :::......::||||::..:|:|.
  Fly  2401 QELLDVRHSVFIVGNAGTGKTKIWQTLRETYR---------IQKLKPVCHVLNPKALSNDELFGI 2456

  Fly  1991 FDPVSHEWYDGVLAKTFREQVQGPKGERAWVMFDGPVDAVWIENLNTVLDDNKKLCLMSGEIMQM 2055
            .:|.:.||.||:.:...|||...|.|...|::.||.:|.:|||:|||::||||.|.|.|.|.:.:
  Fly  2457 VNPTTREWKDGLFSSIMREQANMPPGNPKWIVLDGDIDPMWIESLNTLMDDNKILTLASNERISL 2521

  Fly  2056 TKLMNMMFEPADLEQASPATVSRCGMIYMEPSQLGWRALHKSFINVLVNKVGLGDIYMTLFEDMT 2120
            .:.|.::||...|:.|:||||||.|::|:.|..|||.....|::...|:.:..| |...|||...
  Fly  2522 KREMRLLFEVGHLKAATPATVSRAGILYINPQDLGWSPYVSSWLETRVDMIERG-ILNALFEKYF 2585

  Fly  2121 EWLVPAALEFLPQCKQMLELSPIYQYQTFSRFFLHFLE--------------------------- 2158
            ..|:....:|       ..::||.. ....:...|.||                           
  Fly  2586 PCLMQRQRDF-------RRITPITD-MAMIQMTCHLLECLLDSDEGNADGRGRGSATGGAANPHS 2642

  Fly  2159 ------KHKQFNQAWFQQMFLFCFAWAYCSALTGQGQKTFDALLRKVIYGSNENFPKPKYFSLNR 2217
                  .|:....| .:.:|::...|::.|||:           :.||...:..|.| .:....:
  Fly  2643 LHHGELSHEAMVMA-LETIFVYATVWSFGSALS-----------QDVIIDWHREFHK-WWIGEFK 2694

  Fly  2218 GQMFPEKLLFLDYRFD-EAENWWTWQKSDDSASTTSNFPENAQISELIVPTKETGYISYWQEFCI 2281
            ....|.:....||:.: :...:..|.:.....|..........:..:::.|.||..::|:.:..|
  Fly  2695 DIKLPSQGTVFDYQLNVQTLKFQPWSELAAHQSLEGQIDSETPLQNVLISTAETIRLAYFLKLLI 2759

  Fly  2282 SKSYAMLVVGPTGTGKSAIITSNLLAMPKFAN--------------------------------- 2313
            .::.|.::||.:|.||.||...   ...::||                                 
  Fly  2760 DRNLACMLVGNSGCGKGAIFRQ---LFGQYANDQELLEVAVSAATAGDSSHQQQSGNPAGAVVVR 2821

  Fly  2314 ------------LVNVINFSARTSAQMVQDTIMSKLDRRRKGVFGPSLGKKCTV-FCDDVAMPSK 2365
                        .|...:|:..||:::.|..:...|:::....:.||..|:..: |.:|:.||..
  Fly  2822 RKASSSATPLLTTVQATHFNFYTSSEIFQKMLDRPLEKKSGRCYAPSGPKRRLIYFVNDLNMPEV 2886

  Fly  2366 DTYGSQAPLELLRTWLDHGYWSDLVDTTKIELVDM---TLMCAMGTLGGSNFIFPRLYRHMFVVA 2427
            |.||:..|..::|.::|:..|   .|..:::|.|:   .....|....||..|.|||.||..|.:
  Fly  2887 DAYGTVQPHTIMRQFMDYRQW---YDRQRLQLKDIRHCQFAACMNPTAGSFTIDPRLQRHFCVFS 2948

  Fly  2428 VDSFEDSTIVRIFTTIGDWHF---SKGYPEKVALLSRGLSEAMVSVYRDAIRSFLPTPAKSHYSF 2489
            |....:.|:..|:.:|...|.   |:|:.:::..:...|....::::|....:||||..|.||.|
  Fly  2949 VAPPGEDTLHHIYGSILSSHLESPSQGFTKEIRSIGSLLVRVGIALHRRVEYAFLPTALKFHYLF 3013

  Fly  2490 SLRDITRVFQGI---VMVPPKR------------MPDPEKLGRLWAHETYRVFYDRLVDQQDRDR 2539
            :|||:|.::||:   |..|...            ...|.:|.||:.||.:||::|||||..|   
  Fly  3014 NLRDLTGIYQGLMNSVGAPASAGGGGASGFGGTICSRPSELMRLYVHEAFRVYHDRLVDPYD--- 3075

  Fly  2540 LLVMAVDACKSNLRFPLEQAFGERIEPGEKLTDNDL---RNLFYGNYMEPDAEPKFYDEGDTYEK 2601
                 :.:.||::|...::.|.:        .|.|.   ..|.|.::.:...:.| |....:::.
  Fly  3076 -----IKSFKSSIRDIFKKDFED--------FDEDFVFAEPLIYSHFAQSLVDQK-YMPLKSWDS 3126

  Fly  2602 LEKLMKYYLREYNSFSSTPMDLVMFRFAIEHVSRVSRVLQMPRGNILMVGMGGSGRRSSARLAAY 2666
            |.:|:......||..... |:||:|..|:.||.|::|:|:.||||.|::|:||||:::.|||||:
  Fly  3127 LYQLLIEAQASYNEVVGY-MNLVLFEDAMIHVCRINRILESPRGNALLIGVGGSGKQTLARLAAF 3190

  Fly  2667 IADCRLMTVQVSKSYTITDWRDDLKKILMSASFNLNHTVFLFSDAQATDEGYVEDINGILNTGDL 2731
            |:...:..:|:.:.:.:.|.|:::..:.|........:|||.||||..||..:..||.:|.:|::
  Fly  3191 ISSLNVSQIQIKRGFGLLDMREEIGNLYMKVGLKNLASVFLISDAQIPDESILMLINDLLASGEI 3255

  Fly  2732 PNLYQLEDKATIMENMANVAKQLGKILDTLPSEVYAYYIDRIREQLHIALAFSPIGDSFKERIRV 2796
            |.|:..:...||...:.|..||.| .||| ....:.|:::::|..|.:.|.|||:|.:.:.|.|.
  Fly  3256 PELFNDDQLDTITNGIRNEVKQSG-TLDT-KENCWRYFVEKVRRLLKVVLCFSPVGQTLRVRARK 3318

  Fly  2797 YPSLINCCTIDWYMPWPEEALSRVGVYFVSSMNLNRPHGEETQEPVQSKDAADPDEEEVRRETVG 2861
            :|::|:...|||:..||:.||..|...|::.:|                               |
  Fly  3319 FPAIISRTAIDWFHEWPKSALESVSQKFLNEIN-------------------------------G 3352

  Fly  2862 VEREQTQLEADLV---DCVMYFHQSVVDASEKCYLELNRR-NYVTPSAYLELLKAFRTFYTRKLD 2922
            :      ||..||   .|.|.:....|:...:.||:..:| ||.||..:||.:..:|.....|..
  Fly  3353 I------LEPALVPPIGCFMAYVHGTVNQISRIYLQNEKRYNYTTPKTFLEYIFLYRKLLVDKNG 3411

  Fly  2923 EITRLRDRYTTGLEKLDFAAGQVGEMQTNLYDLQPKLKVLSEETDRIMVNIERETAEAEKKKEVV 2987
            |......|..:|:.||...|.||..::..|...:.:|...:...|:::|.:   :||:||.|.  
  Fly  3412 EFAERIARLQSGMSKLAECARQVDTLKHQLAIQEVQLAAKNAAADKLIVIV---SAESEKVKR-- 3471

  Fly  2988 GADEAAANEAAAAAQAIKDD-------CETDLAEAIPAMEAALEALNTLKPADIFIVKSMKNPPY 3045
              :...|:|.....:.|::|       ||.||.:|.||:.||..|||||...::..:||..:||.
  Fly  3472 --ERYIASEEEKRVRIIEEDVSIKTKMCEEDLRQAEPALVAAQAALNTLNKNNLTELKSFGSPPK 3534

  Fly  3046 GVKLTMEAVCVIRG----IKPDRKPDPSGHMVEDYWGPSMRMLSDM-KFLDSLKTFDKDNIPPPI 3105
            .|.....||.|:..    |..||.           |..|..|:..: :||:.|..::||||.|.|
  Fly  3535 AVVNVCAAVMVLLASNGKIPRDRS-----------WKASKLMMVRVDQFLNDLLNYNKDNIHPNI 3588

  Fly  3106 IKRIREKYIADRDFVPEKIKAASMACEGICRWVRAMDVYDKVARIVMPKKAALAEAEGELSQQME 3170
            |:.::| |:.|.:|.|:|:...|:|..|:|.||..:..|.:|..||.||:.||.::..||.:..|
  Fly  3589 IETLQE-YLKDPEFNPDKVVQKSVAAAGLCAWVINLHRYHQVFLIVGPKQQALQDSHQELLEARE 3652

  Fly  3171 KLNAKRAELQVILDKLQKLNDFFAEKSREKKRLEDEIDNCEKKLNRAEKLLGGLGGEKTRWSEAA 3235
            :|...:|::..:..||.::...|.....||:|.:.|.|.....::.|.:|:.||..|..||.|:.
  Fly  3653 RLQYLKAKINNLEAKLAEIQAEFENAVGEKQRCQREADKTAFTIDLAHRLVNGLANENVRWKESV 3717

  Fly  3236 KNLHESISNIVGDVLLAGGCTAYLGYFTTEYRVNI-----LDDWNALCKRKHIPSSETFSLATTL 3295
            ::|...|..:.||:||.....:|:|.||..||..:     |.::..:  ..|||.:|........
  Fly  3718 QSLLAKIGTLPGDILLISSFLSYVGCFTRRYREELQHKMWLPNFRKI--DPHIPHTEGVDTLALF 3780

  Fly  3296 GHPMTIRAWSLAGLPADNFSVENGIIVTNSSRYSLLIDPQVQANKWIKNMEKNNNLKVIKQSDAN 3360
            .....|.||:..|||.|..|.||..|:..|:|:.|:||||:|..||||| ....:|.|::.....
  Fly  3781 SDDAQIAAWNNEGLPMDRMSTENATILQYSTRWPLMIDPQLQGIKWIKN-RFGTDLVVLRLRQKG 3844

  Fly  3361 YMQVLELAITFGQPVLIENVGEKLDSNLTPILEKNVIKHKGGLFIKSGDQMIEYNPNFRLYITTC 3425
            :::.||.:|:.|..||||.:.|.:|:.|.|:|.:.:||.  |.:::.||:.||::.:|||.:.|.
  Fly  3845 FLEALEKSISQGDTVLIEQIEESMDTVLEPLLSRALIKK--GRYLRIGDKEIEFHASFRLILHTK 3907

  Fly  3426 LRNPRYPPEVMVMVTVLNFMITEQGLREQLLAIVVAHERPDLQEKKEQLIIESARNRDALYTIES 3490
            :.||.|.||:....|::||.:|..||.|||||.||..|||||::.|.::.::..:.:.:|..:|.
  Fly  3908 MANPHYKPEMQAQTTLINFTVTPDGLEEQLLAEVVKIERPDLEQMKTEVTVQQNKFKISLKALED 3972

  Fly  3491 KILEVLSTSEGNVLEDENAINILSSSKILSEDIQEKQVIAVATEIEIDAARQQYIPVSKHSAILF 3555
            ::|..|::|..|||:|...:..|.::|...::|:.|...|..|.::||..|..|...:|.:|||:
  Fly  3973 ELLARLASSGENVLDDHALVINLENTKRTVDEIEAKVREARVTTLQIDDTRNIYRSAAKRAAILY 4037

  Fly  3556 FCISELANVDPMYQYSLSWFLNLFVNTILKAPKSDQLSERLKNLNDYFTKSIYTNVCRSLFEKDK 3620
            |.:::|:.::|:|::||..|:|:|...|..|.:|....:|:.:|.:..|...|....|.|||.||
  Fly  4038 FVLTDLSRINPIYKFSLKSFMNVFRQAIAMAAESKNYEKRVLHLVESITLQTYRYTLRGLFEADK 4102

  Fly  3621 LVISLVMCLGILVSQGRVEKAALLFFLTGGIGYKTIPPNPLGAWLPDKSWASVCKAADLEGLKNL 3685
            |..:..|.|.||::..:|.|....|.|.......|:.|..   ::...:|..:.....:|....:
  Fly  4103 LTFTSHMTLRILIAAEQVAKDETDFLLRFPHDPTTLSPLD---FVGRSAWGGIKSLTLIEHFYGI 4164

  Fly  3686 PQMMETYSDEWHNFYDASNPDQLQLPAPHNTVNDMYFLIVIKSLRPDKLVPAVRAFITRNLDRSF 3750
            .:.||.|:..|..|..:..|::.|.|........:..|.:|:|||||::..|:|.|:.:.:.||:
  Fly  4165 DKDMENYTKRWRKFMASDTPEREQFPGEWKHRTPLQKLCIIRSLRPDRMTYAMRQFVEQTMGRSY 4229

  Fly  3751 --VEPPPFDLAASFADSSPKIPLVFLLSAGSDPMASLFMFAKQRNMY---DKLKTISLGQGQGPR 3810
              ::.|||  .|.|.:.:...|..|:||.|.||:..:..:.:::..:   |.|..|||||||...
  Fly  4230 AEIQTPPF--GAIFQELNAATPAFFILSPGVDPIRDVERYGQRQGFHSESDTLVNISLGQGQELL 4292

  Fly  3811 AEKMIMEAARHG-QWVVLQNCHVAISWMGDLERICNDTTLTDGA--NHDYRLWCTSYPSA----- 3867
            ||:.|:.|...| |||:|||.|:.::|:..||::.....|...:  ..::||:.::.|:.     
  Fly  4293 AEQAIIGALESGQQWVILQNIHLVVNWLPTLEKLIERIVLQSESKGESNFRLFISAEPAPDPQYH 4357

  Fly  3868 VFPVSVLQNSVKMTNEPPKGLRANMHRSFTSDPLMRDKFFTNAFLFSDSANKCWLRG-----VFA 3927
            |.|..:|::|:|:.||||.|:.||:|:::       |.|      ..|:...|....     :||
  Fly  4358 VIPQGILESSLKVVNEPPSGMAANLHKAW-------DNF------SQDALETCTQEAEFKSILFA 4409

  Fly  3928 LVFFHAVVQERREFGPLGWNIPYEFNESDLKISLLQLKMFINQSQSIPFRGHVYLTGECNYGGRV 3992
            |.:||||..|||:|||.|||..|.||..||.||...|..::..|..||:....||.||..|||.:
  Fly  4410 LCYFHAVAGERRKFGPQGWNKVYPFNIGDLTISSNVLHNYLEGSNRIPWEDLRYLFGEIMYGGHI 4474

  Fly  3993 TDDKDRRLILSLLNMIYNPNTIEEDNYALSQSGTYRVPLSPTRLNSIEYVSSFPLSPH------- 4050
            |||.||||..:.|..:...:.|:.|                     .|....||..|:       
  Fly  4475 TDDWDRRLCQTYLEELLQQDLIDGD---------------------FELCPGFPAPPNLDFEGYH 4518

  Fly  4051 -----------PEVYGLHENADINRNVKETNALISGVLLTQTDLMASVKASSSGGAKEDPAIAIC 4104
                       |.:||||.||:|......:..|:..:...|.  ..|..:|..|..:|:....:.
  Fly  4519 SYITEMLPEESPLLYGLHPNAEIGFLTTASEQLLRTIFELQP--RESELSSHCGAPREELVKIMI 4581

  Fly  4105 KQVLKQLPEEFN----IDEVSKTYPVIYTNSMNTVLRQELIRFNRLLSYIRKSLVNVGKAVVGQI 4165
            ...|.:|.:|||    ::.|.:..|.:      .|..||..|.|.|:..|::||..:...:.|::
  Fly  4582 DDFLDKLQDEFNLQALLNRVERKTPFV------VVALQECERMNALIREIKRSLRELMLGLRGEL 4640

  Fly  4166 AMIPELERTHASMVIGKLPADWLKKSYPSLKPLGSYVSDLLARLAFFQEWIDNGE-PMVYWISGF 4229
            .:..|:||...::....:||.|.:.:|||:..|.|:.:|||.|:.....|:::.: |...|:.|.
  Fly  4641 TITQEMERLDHAIFYDHVPAAWARLAYPSMLGLQSWFADLLHRIKELAGWLNDFKLPCAIWLGGL 4705

  Fly  4230 YFTQSFITGVLQNYSRKNRFQIDMILIEFAVT---KFEVQVPGTPDIGAYIRGIFIEGARWNRKT 4291
            :..|||:|.::|..:||:...:|.:||...||   |.:|.:|  |..||::..::::||.|:.:.
  Fly  4706 FNPQSFLTAIMQESARKHDLPLDRMLISCDVTKKQKDDVTLP--PMEGAFVHDLYMDGASWDCQL 4768

  Fly  4292 KEVDESFSKVLFDTLPVIYLRPVLKALEDLPRSTAGGEPETIYDCPVYKTSERRGVLSTTGHSTN 4356
            ..:.....|.:...:||||::.:::..::|.|         :|:||:|||..|         ...
  Fly  4769 NSIVALRPKEMLCAMPVIYIKSIVQEKQELQR---------VYECPLYKTRSR---------GNT 4815

  Fly  4357 FVMYLQLRCSRKPMHWINRGTACLCQ 4382
            :|....|:...:|..||..|.|.|.|
  Fly  4816 YVWTFNLKTRERPSRWILGGVALLLQ 4841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dnah3NP_647937.2 DHC_N2 1083..1489 CDD:462462 103/424 (24%)
DYN1 <1322..4005 CDD:227570 912/2864 (32%)
AAA_6 1620..1946 CDD:463697 168/325 (52%)
AAA_9 3302..3523 CDD:463702 84/220 (38%)
Dynein_C 4067..4381 CDD:465677 84/321 (26%)
CG3339NP_001036762.2 DHC_N1 279..903 CDD:462457 70/375 (19%)
DHC_N2 1532..1943 CDD:462462 103/423 (24%)
DYN1 1759..4514 CDD:227570 925/2922 (32%)
AAA_6 2095..2421 CDD:463697 168/325 (52%)
MT 3419..3759 CDD:463699 111/358 (31%)
Dynein_C 4545..4840 CDD:465677 84/322 (26%)

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