DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13708 and NUD1

DIOPT Version :10

Sequence 1:NP_647933.1 Gene:CG13708 / 38582 FlyBaseID:FBgn0035577 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_015018.3 Gene:NUD1 / 854555 SGDID:S000005900 Length:851 Species:Saccharomyces cerevisiae


Alignment Length:753 Identity:131/753 - (17%)
Similarity:251/753 - (33%) Gaps:232/753 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 QQQQLQQQQNYLPQTSLLKIEPFVPSFNQRLRRRPIGRSHSTLSHNVISKRPVPQQHQQQQIQQP 106
            |:.:|..|...|...|..|:.....|.:.::.:. ...:|.....|..|:  |.:......:::|
Yeast     6 QEAELSSQLENLTINSPRKLRSNAHSNSGKVFKE-YESNHDFQDSNFTSQ--VVEPAISDSVKKP 67

  Fly   107 SELQV-----GQQQQLKRGYAAAAQIRQQQQQQQRNLPRGVGIQRQRSKSTSSSAASNSCRPATA 166
            ..:.|     ...|::..|::.......|:.|.::..|.                          
Yeast    68 PTMTVLNNYSTVHQKVPSGFSGTTATSHQEAQWKQYFPG-------------------------- 106

  Fly   167 AVTPNTLVGSTGGTLVSGAIVTPQPNGICRIQRLPKEREELPDRINYDKRGLTAIPIFEQEPNLR 231
                   :||.|||...||:.|        ..::|:....:.|.:. |..|:.....|::..:::
Yeast   107 -------IGSGGGTNFGGAVGT--------ANKVPESDLIVSDLVK-DLSGVLETNTFKRHLDMK 155

  Fly   232 -------------LLSLQH--NLINTFHIPKEVTPPPPPVPPPAV------ATPRESNNNKLGEY 275
                         .:|:.|  :..|...:....:......|....      ...::.:|..:|.|
Yeast   156 NKTTTMQTHENHDTISISHSKDFFNAEKVSSSFSDDSDSGPAAEAHDVFDGILQKQKSNYLVGSY 220

  Fly   276 SNGNGNKEGGRSGLRGHHPGRLTRAMTNAGGNSHRLSPKSGG--------SPGSGSPLTTQALAI 332
            .:.:.||....:.             .|...||..::.|...        ...:....::.:...
Yeast   221 PSNSNNKNNNNNN-------------NNNNNNSININNKDNARTKEEDEEDTSNSFEFSSSSSMS 272

  Fly   333 NGGTAAGR-SKLAKR-----------GY--NYGQAQLTPPPALRMRYGLEKSKSFVSSSLQAMKH 383
            :..|.:|| ||:.|:           ||  |:......||    :..||:.|.|....:..:.:.
Yeast   273 SSQTQSGRKSKVLKKPPLNTISPGQLGYQFNHTHGAWDPP----LNQGLDVSSSHSLDNTSSNQS 333

  Fly   384 Q----------------QQLIQRRAM-LKATRAGGV----------------------------- 402
            |                ..::.::|. |.:|:.|.|                             
Yeast   334 QFATMVPTGDNHTNGKAPSILDKKAYELTSTKPGDVGYRQKKIQEEENLANSDDTPLDTPKFNDL 398

  Fly   403 VAPGGAASNLLQSCDEGSALHNSNL-----SLYGGCGEEEESPSVMTSISAL---------EQLS 453
            ....|..:.:........::.||||     .|.....|..|.   :||||.:         :.:|
Yeast   399 FTKNGTRAKVKGQMRTSRSISNSNLLEAHKKLKTFPAERVED---ITSISEVNTSFNETEKQLIS 460

  Fly   454 IKNKQLSLSASYGSIFQQL-----------------------VFLDLYDNQIERIANLDGLPSLS 495
            |...:||.|.||.|.::::                       :.|:|.||::.   .|:|:||..
Yeast   461 ILTSKLSGSPSYDSDWEKILKVDLSRGKLKNMFGMQRLLPNVLVLNLSDNEMN---TLEGIPSNV 522

  Fly   496 V-LLLGKNRITDIG-GLSSLKDTLRVLDLHGNKLTSLGSRINCLQQLKSLNLAGNQIRQINQQDF 558
            | |....|:||... .|:...| |..|||..|.|.:....::....|:.:||:.|.|:.:   :.
Yeast   523 VQLFCSNNKITSAHCSLAGFHD-LECLDLSYNLLNTSLKFLSLCHHLQEVNLSYNSIQSL---EG 583

  Fly   559 LGLRCLRELNLKRNKLRRINGFQHLV-----------ALERLWLCHNDLHRV------------- 599
            :|...:::|||..|::..|..|:.|:           .:|.|.|.:|::..|             
Yeast   584 IGSSRMKKLNLSNNEINGIIDFEQLILTNNSVVGGWLTVEVLDLSNNNIIGVRNINCLPRLKVLN 648

  Fly   600 ---DDMASIARATRLLEVTIENNPVSLAGDCVSFLVSY 634
               :.:.||..::::...|:....:...|..:|.|.:|
Yeast   649 LNGNPLVSIVESSKMENGTLRALSIKNTGGALSKLQNY 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13708NP_647933.1 leucine-rich repeat 449..471 CDD:275380 8/30 (27%)
PPP1R42 467..661 CDD:455733 47/220 (21%)
leucine-rich repeat 472..493 CDD:275380 6/43 (14%)
leucine-rich repeat 494..516 CDD:275380 6/23 (26%)
leucine-rich repeat 517..539 CDD:275380 6/21 (29%)
leucine-rich repeat 540..563 CDD:275380 6/22 (27%)
leucine-rich repeat 564..585 CDD:275380 7/31 (23%)
leucine-rich repeat 611..637 CDD:275380 5/24 (21%)
NUD1NP_015018.3 LRR <520..802 CDD:443914 39/171 (23%)
leucine-rich repeat 522..544 CDD:275380 6/21 (29%)
leucine-rich repeat 545..567 CDD:275380 6/21 (29%)
leucine-rich repeat 568..588 CDD:275380 6/22 (27%)
leucine-rich repeat 589..621 CDD:275380 7/31 (23%)
leucine-rich repeat 622..643 CDD:275380 5/20 (25%)
leucine-rich repeat 699..738 CDD:275380
leucine-rich repeat 739..768 CDD:275380
leucine-rich repeat 794..806 CDD:275378
Blue background indicates that the domain is not in the aligned region.

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