DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13708 and Lrrcc1

DIOPT Version :10

Sequence 1:NP_647933.1 Gene:CG13708 / 38582 FlyBaseID:FBgn0035577 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001157051.1 Gene:Lrrcc1 / 71710 MGIID:1918960 Length:1026 Species:Mus musculus


Alignment Length:364 Identity:91/364 - (25%)
Similarity:151/364 - (41%) Gaps:95/364 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   480 NQIER---------IANLD-GLPSLSVLLLGKNRITDIGGLSSLKDTLRVLDLHGNKLTSLGSRI 534
            ::|||         :..:| ||.|:|.|              ||..::..::||.|.::.:.| |
Mouse     7 SEIEREDGDSSCGDVCFMDKGLHSISEL--------------SLDSSIHAINLHCNNISKISS-I 56

  Fly   535 NCLQQLKSLNLAGNQIRQINQQDFLGLRCLRELNLKRNKLRRINGFQHLVALERLWLCHN----- 594
            :.:..|:.|:|:.|||.||...:.|...|  .|||..|.:.|:.|.:.||.|.:|.|.:|     
Mouse    57 DHIWNLRHLDLSSNQISQIEGLNTLTKLC--TLNLSCNLITRVEGLEALVNLTKLNLSYNHINDL 119

  Fly   595 ----------------DLHR--VDDMASIARAT--------RLLEVTIENNPVSLAGDCVSFLVS 633
                            |||.  :|.:..:.:.|        .:||...|.||:.|.....:.::.
Mouse   120 SGLMPLHGLKYKLRYIDLHSNYIDSIHHLLQCTVGLHFLTNLILEKDGEGNPICLIPGYRAIILQ 184

  Fly   634 YLPLLQTLS-----QMPIT-EQVRRAALAWRQHKEQAQAAPG------SSEAYHNIRREEVISN- 685
            .||.|:.|.     ..|:: |::..:.|         |...|      ||::..||..:||..: 
Mouse   185 TLPQLRILDCKNIFGEPVSLEEINSSHL---------QCLEGLLDNLVSSDSPLNISEDEVNDDV 240

  Fly   686 ARTNWELLRSQQTVVGRPKSRL---------TSELAKINESNEGPAGEEGEMESEESQQPKELMD 741
            :....::|.|.:.....|:..:         :||..|||:.|:  ...|.:::..:.|..:.|.:
Mouse   241 SAPPMDVLPSLKEFKSTPEDNVLASLLSVCPSSEPEKINQEND--FQNEVKLQKLDDQILQLLNE 303

  Fly   742 ELQALIKLPPIAKDLRNPHEEDGASSEASSLGPNVDSCS 780
            ...:||...| .|||| |..:...:|| |..| |...||
Mouse   304 TNNSLIDNVP-EKDLR-PKRDTDITSE-SDYG-NRRECS 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13708NP_647933.1 leucine-rich repeat 449..471 CDD:275380
PPP1R42 467..661 CDD:455733 56/227 (25%)
leucine-rich repeat 472..493 CDD:275380 6/22 (27%)
leucine-rich repeat 494..516 CDD:275380 4/21 (19%)
leucine-rich repeat 517..539 CDD:275380 5/21 (24%)
leucine-rich repeat 540..563 CDD:275380 9/22 (41%)
leucine-rich repeat 564..585 CDD:275380 7/20 (35%)
leucine-rich repeat 611..637 CDD:275380 7/25 (28%)
Lrrcc1NP_001157051.1 PPP1R42 25..197 CDD:455733 50/188 (27%)
LRR 1 39..60 5/21 (24%)
leucine-rich repeat 43..61 CDD:275378 5/18 (28%)
LRR 2 61..82 8/20 (40%)
leucine-rich repeat 62..83 CDD:275378 9/20 (45%)
LRR 3 83..104 7/22 (32%)
leucine-rich repeat 84..105 CDD:275378 8/22 (36%)
LRR 4 105..126 4/20 (20%)
leucine-rich repeat 106..131 CDD:275378 4/24 (17%)
LRR 5 131..152 4/20 (20%)
leucine-rich repeat 132..145 CDD:275378 4/12 (33%)
leucine-rich repeat 158..188 CDD:275380 7/29 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 310..338 11/31 (35%)
SMC_N 467..>766 CDD:481474
SMC_prok_B <646..1026 CDD:274008
Blue background indicates that the domain is not in the aligned region.

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