DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13708 and CG10839

DIOPT Version :9

Sequence 1:NP_001261433.1 Gene:CG13708 / 38582 FlyBaseID:FBgn0035577 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001246039.1 Gene:CG10839 / 34944 FlyBaseID:FBgn0028858 Length:182 Species:Drosophila melanogaster


Alignment Length:140 Identity:37/140 - (26%)
Similarity:65/140 - (46%) Gaps:30/140 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   534 INCLQQLKSLNLAGNQIRQINQQDFLGLRCLRELNLKRNKLRRINGFQHLV-ALERLWLCHNDLH 597
            :|.|.:.:.|:|:.|.|.:|.  ...|::.|:.|:|.||.|:.:||.:.|. .||.||:.:|::.
  Fly    44 LNSLTECQKLSLSSNMIEKIT--GISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWVSYNNIE 106

  Fly   598 RVDDMASIARATR-----------------------LLEVTIENNPVSLAGDCVSF---LVSYLP 636
            :...:.|: :|.|                       |.|:|...||::...|..:|   .|..||
  Fly   107 KTKPLESM-KALRVFYISFNMIKDWTEFMRMGVPPN
LSEITFVGNPLNENMDQSAFTAEAVRRLP 170

  Fly   637 LLQTLSQMPI 646
            .::.|...|:
  Fly   171 NMKKLDGEPV 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13708NP_001261433.1 LRR_RI <428..572 CDD:238064 11/37 (30%)
leucine-rich repeat 449..471 CDD:275380
leucine-rich repeat 472..493 CDD:275380
LRR_8 475..527 CDD:290566
leucine-rich repeat 494..516 CDD:275380
LRR_8 516..574 CDD:290566 13/39 (33%)
leucine-rich repeat 517..539 CDD:275380 2/4 (50%)
leucine-rich repeat 540..563 CDD:275380 6/22 (27%)
LRR_4 564..604 CDD:289563 14/40 (35%)
leucine-rich repeat 564..585 CDD:275380 9/21 (43%)
leucine-rich repeat 611..637 CDD:275380 9/28 (32%)
LRR_9 <1059..1153 CDD:258718
CG10839NP_001246039.1 LRR_RI <37..129 CDD:238064 25/87 (29%)
LRR_4 48..90 CDD:289563 14/43 (33%)
leucine-rich repeat 50..71 CDD:275380 6/22 (27%)
LRR_8 51..105 CDD:290566 20/55 (36%)
leucine-rich repeat 72..94 CDD:275380 9/21 (43%)
leucine-rich repeat 95..116 CDD:275380 6/21 (29%)
leucine-rich repeat 117..141 CDD:275380 1/23 (4%)
leucine-rich repeat 142..171 CDD:275380 9/28 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0531
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.