DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13708 and Ppr-Y

DIOPT Version :10

Sequence 1:NP_647933.1 Gene:CG13708 / 38582 FlyBaseID:FBgn0035577 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001015502.3 Gene:Ppr-Y / 3355180 FlyBaseID:FBgn0046697 Length:569 Species:Drosophila melanogaster


Alignment Length:284 Identity:67/284 - (23%)
Similarity:110/284 - (38%) Gaps:55/284 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   468 IFQQLVFLDLYDNQIERIANLDGLPSLSVLLLGKNRITDIGGLSSLKDTLRVLDLHGNKLTSLGS 532
            :.:|::.:.|..|.|.||.:|..||:|:.|.|..|:|..|                        .
  Fly    57 VLEQILTMRLEFNNILRIDHLWILPNLTKLCLNCNKIETI------------------------E 97

  Fly   533 RINCLQQLKSLNLAGNQIRQINQQDFLGLRCLRELNLKRNKLRRINGFQHLVALERLWLCHNDLH 597
            .|..|..||.|||:.|.|.:|...|  .|..|..|:|..||:..|.....|..|..:.|.:|.:.
  Fly    98 NIEMLTNLKDLNLSFNFIEKIENLD--TLVNLEVLSLFSNKIEAIENIDMLTMLVIISLGNNLID 160

  Fly   598 RVDDMASIARATRLLEVTIENNPVSLAGD-C-VSFLVSYLPLLQTLSQMPITEQVRRAA--LAWR 658
            .|:.:........|..:.:|.||::...: | :.::.:.||.|.......|..::|..|  |.:|
  Fly   161 TVEGIERFRFMNNLKIINLEGNPIAKRTNFCLLKYISAILPKLNYYEYTFIKSELRAEACNLYYR 225

  Fly   659 QHKEQAQAAPGSSEAYHNIRREEVISNARTNWELLRSQQTVVGRPKSRLTSELAKINESNE---- 719
            :.:|.........:|...:.||:  |.|:                  ||.|...:..:.::    
  Fly   226 EIREIEDKQEKEIQARKFLEREQ--SEAK------------------RLASSFVEHLDGHQLFDS 270

  Fly   720 -GPAGEEGEMESEESQQPKELMDE 742
             ....|:|.:......|.:||.||
  Fly   271 LWRGDEDGRVLMLVGTQAQELADE 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13708NP_647933.1 leucine-rich repeat 449..471 CDD:275380 0/2 (0%)
PPP1R42 467..661 CDD:455733 51/196 (26%)
leucine-rich repeat 472..493 CDD:275380 7/20 (35%)
leucine-rich repeat 494..516 CDD:275380 6/21 (29%)
leucine-rich repeat 517..539 CDD:275380 2/21 (10%)
leucine-rich repeat 540..563 CDD:275380 10/22 (45%)
leucine-rich repeat 564..585 CDD:275380 7/20 (35%)
leucine-rich repeat 611..637 CDD:275380 6/27 (22%)
Ppr-YNP_001015502.3 leucine-rich repeat 63..82 CDD:275378 7/18 (39%)
LRR <80..313 CDD:443914 60/261 (23%)
PPP1R42 82..>176 CDD:455733 30/119 (25%)
leucine-rich repeat 83..104 CDD:275378 8/44 (18%)
leucine-rich repeat 105..126 CDD:275378 10/22 (45%)
leucine-rich repeat 127..148 CDD:275378 7/20 (35%)
leucine-rich repeat 149..162 CDD:275378 3/12 (25%)

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