DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13708 and Lrrc49

DIOPT Version :10

Sequence 1:NP_647933.1 Gene:CG13708 / 38582 FlyBaseID:FBgn0035577 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001423387.1 Gene:Lrrc49 / 300763 RGDID:1309466 Length:752 Species:Rattus norvegicus


Alignment Length:1027 Identity:228/1027 - (22%)
Similarity:381/1027 - (37%) Gaps:353/1027 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 PGR-----LTRAMTNAGGNSHRL--SPKSGGSPGSGSPLTTQALAINGGTAAGRSKLAKRGYNYG 351
            |||     |.|..::..|:...:  ||::..|..|.:...|:...::..||.  :.|:.    :|
  Rat    48 PGRLLQHDLERNYSSRQGDGRVISPSPRNKSSCISSTTNVTELCGLDMRTAT--TSLSA----FG 106

  Fly   352 QAQLTPPPALRMRYGLEKSK--------SFVSSSLQAMKHQQQLIQRRAMLKATRAGGVVAPGGA 408
            .:.:..|...|:|.|...:.        :.||||:.:..                          
  Rat   107 DSSIQTPSKPRIRQGCHSAGPNVSGDHINLVSSSMPSFP-------------------------- 145

  Fly   409 ASNLLQSCDEGSALHNSNLSLYGGCGEEEESPSVMTSISALEQLSIKNKQLSLSASYGSI--FQQ 471
               :||...|...|::..|:|      |.:..:|...|...|.|.:.|.|.:......:|  .|:
  Rat   146 ---ILQRSSEEKTLYSDRLTL------ERQKLTVCPIIDGEEHLRLLNFQHNFITRIQNISNLQR 201

  Fly   472 LVFLDLYDNQIERIANLDGLPSLSVLLLGKNRITDIGGLSSLKDTLRVLDLHGNKLTSLGSRINC 536
            |:||||||||||.|:.|..|.||.|||||||||..|..|.:||: |.|||||||::|.: ..:|.
  Rat   202 LIFLDLYDNQIEEISGLSTLKSLRVLLLGKNRIKKISNLENLKN-LDVLDLHGNQITKI-ENVNH 264

  Fly   537 LQQLKSLNLAGNQIRQINQQDFLGLRCLRELNLKRNKLRRINGFQHLVALERLWLCHNDLHRVDD 601
            |..|:.||||.|.:..::..:  ||..|.||||:.|::..:....:|..|:||:|..|::...:.
  Rat   265 LCDLRVLNLARNLLSHVDNLN--GLDSLTELNLRHNQITFVRDVDNLPCLQRLFLSFNNITSFES 327

  Fly   602 MASIARATRLLEVTIENNPVSLAGDCVSFLVSYLPLLQTLSQMPITEQVRRAALAWRQHKEQAQA 666
            ::.:|.:|.|.::|.:.||::........::..:..|:.|....|||:.||.|....: ||:.:.
  Rat   328 VSCLAESTSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRVASVVAK-KEEEKK 391

  Fly   667 APGSSEAYHNIRREEVISNARTNWELLRSQQTVVGRPKSRLTSELAKINESNEGPAGEEGEMESE 731
            .....::....::...|:|....|:|   ||.|         :.:|.|.:               
  Rat   392 RESHKQSLLKEKKRLTINNVARKWDL---QQRV---------ANIAIIQD--------------- 429

  Fly   732 ESQQPKELMDELQALIKLPPIAKDLRNPHEEDGASSEASSLGPNVDSCSSCYSSDNEDGGAKNKP 796
                                 .||..:|.:|                  ||              
  Rat   430 ---------------------RKDSESPPQE------------------SC-------------- 441

  Fly   797 QTPQIDENSNKVGLTEKPPSSPVTVASQSPEVAIVTPSAPVSSSPSPPALTLTPPAAPGTPVPGT 861
               |||                                                        .||
  Rat   442 ---QID--------------------------------------------------------GGT 447

  Fly   862 TSPSPSTTIISTLPVPATASSNASRPTSSKQRSRHAPITQLGLQINQRGGAAASSKRYMAGSLVR 926
            .|..|..                                                    ||||  
  Rat   448 ISAFPEE----------------------------------------------------AGSL-- 458

  Fly   927 AQTVSSSTSNSSSSNSAGRGKATNNGLNLVATQTKAATSGNNQSSAGAAAGTGGSTTAAPPAGAA 991
                           .||...|. .||::..|                                 
  Rat   459 ---------------DAGLSSAL-QGLSVTET--------------------------------- 474

  Fly   992 ATPNAAITVSKPSAAEREREQGGDYLIEICGRYLNIYGQGALRFIDKQWNPAKANDVHTLNFSYI 1056
                                    :|:|:.|..|::||.|||..:|:.|:...|..|.|::|::|
  Rat   475 ------------------------HLVELDGETLSLYGSGALECLDRNWSVQTAGMVTTVSFTFI 515

  Fly  1057 NFNSIVCVLGRIKLRFPHAEHYVFRETNISCLGQLNGLAELQGLSSLMIDAEGNGITLKETWRAY 1121
            .|:.||.||.::|::||::.|..|||||:..|.|.|.||:|:.:..|.||.:||.:.....|:.|
  Rat   516 EFDEIVQVLPKLKMKFPNSLHLKFRETNLVMLQQFNALAQLRRVDQLTIDPQGNPVVNFTLWKYY 580

  Fly  1122 AIYRLSHWGLKQLNGQEVTEAEVEAANAMYVGLSDLVLWSMPEVMLQPLLARLRLDETCTASKLS 1186
            .::||||:.::::||.|||:.::..|..::..|:.:....:|:..:..:|...|           
  Rat   581 VLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRMISILGDAR----------- 634

  Fly  1187 PKEWLLRPDNKSLRL-VVGKEALQWKKNAGGGAGTSTSMNINQGTEAGSTAMAPSVRDRGRQHFA 1250
            .|::....:||..:. ::.:|....|:..|.....:|   :|..|..........::|  ::.|.
  Rat   635 KKQFRYLLENKCKKPGILCEETSDSKRLMGENTNRAT---LNYTTREFYHEKLEEIKD--KKKFC 694

  Fly  1251 LL----LENTCNAVE-KLHKLETLWPSMLLDIVRNTLLDYAQLDVYLRNLMC 1297
            .|    |.....|:. |...|:.|||.|.:::||:.:::....|.|::  :|
  Rat   695 RLYVEDLVKEATAINMKNEALQKLWPQMFIELVRDAVIEIRSKDSYMK--LC 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13708NP_647933.1 leucine-rich repeat 449..471 CDD:275380 5/23 (22%)
PPP1R42 467..661 CDD:455733 76/195 (39%)
leucine-rich repeat 472..493 CDD:275380 14/20 (70%)
leucine-rich repeat 494..516 CDD:275380 14/21 (67%)
leucine-rich repeat 517..539 CDD:275380 11/21 (52%)
leucine-rich repeat 540..563 CDD:275380 8/22 (36%)
leucine-rich repeat 564..585 CDD:275380 7/20 (35%)
leucine-rich repeat 611..637 CDD:275380 4/25 (16%)
Lrrc49NP_001423387.1 leucine-rich repeat 160..177 CDD:275380 5/22 (23%)
leucine-rich repeat 180..201 CDD:275380 4/20 (20%)
PPP1R42 183..378 CDD:455733 75/198 (38%)
leucine-rich repeat 202..223 CDD:275380 14/20 (70%)
leucine-rich repeat 224..245 CDD:275380 13/20 (65%)
leucine-rich repeat 246..267 CDD:275380 11/21 (52%)
leucine-rich repeat 268..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..311 CDD:275380 7/20 (35%)
leucine-rich repeat 312..336 CDD:275380 6/23 (26%)

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