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Protein Alignment CG13708 and Dnaaf11

DIOPT Version :10

Sequence 1:	NP_647933.1	Gene:	CG13708 / 38582	FlyBaseID:	FBgn0035577	Length:	1301	Species:	Drosophila melanogaster
Sequence 2:	XP_038934705.1	Gene:	Dnaaf11 / 299920	RGDID:	1559937	Length:	486	Species:	Rattus norvegicus

Alignment Length:	503	Identity:	101/503 - (20%)
Similarity:	170/503 - (33%)	Gaps:	155/503 - (30%)

- Green bases have known domain annotations that are detailed below.

  Fly   446 ISALEQLSIKNKQLSLSASYGSIFQQLVFLDLYDNQIERIANLDGLPSLSVLLLGKNRITDIGGL 510
            |.:||:||:..:::..........:.|..|.|.:|.|.:|.|:..|..|..|.|..|.|.
  Rat    34 IFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIAKIENVSKLKKLEYLNLALNNIE----- 93

  Fly   511 SSLKDTLRVLDLHGNK-LTSLGSRINCLQQLKSLNLAGNQIRQINQQDFLGLRCLRELNLKRNKL 574
                   |:.:|.|.: ||.|...:|.:.:|.|:....:.|.            ||||.|..|..
  Rat    94 -------RIENLEGCEWLTKLDLTVNFIGELSSIKTLTHNIH------------LRELFLVGNPC 139

  Fly   575 RRINGFQH--LVALERL-WLCHNDLHRVDDMASI-------------------------ARATRL 611
            ...:|::.  :|.|::| ||...::.|.:.:.::                         ..|.|.
  Rat   140 ADFDGYREFVVVTLQQLKWLDGKEIERSERIQALQNYAAVEQQIREQEKAYCLRRAKEKEEAQRK 204

  Fly   612 LEVTIEN-----NPVSLAGDCVSFLVSYLPLLQTLSQMPITEQVRRAALAWRQHKEQAQAAPGSS 671
            ||...|:     :.....|||.:.:.:..|     |.|              ::|:..| .|.:.
  Rat   205 LEEENESEDKKKSSPGFDGDCYTDIHADCP-----SAM--------------ENKDHLQ-VPETQ 249

  Fly   672 EAYHNIRREEVISNARTNWELLRSQQTVVGRPKSRLTSELAKINESNEGPAGEEGEMESEESQQP 736
            |..|:.::.:.|.:....|     .:..:..|:|||                 |.....|:.::.
  Rat   250 EQQHSTKKSDEIEDDLAFW-----NKPSLFTPESRL-----------------ETLRHMEKQRKA 292

  Fly   737 KELMDELQALIKLPPIAKDLRNPHEEDGASSEASSLGPNVDSCSSCYSSDNEDGGAKNKPQTPQI 801
            ::.:.|.:..:| ||     |....|||...       ||:.....:|..:
  Rat   293 QDKLSEKKKRVK-PP-----RTLITEDGKVL-------NVNEAKLDFSLKD-------------- 330

  Fly   802 DENSNKV------------GLTE---KPPSSPVTVASQSPEVAIVTPSAPVSSSPSPPALT---- 847
            ||..|::            .|.|   :|....|.|..:..::|:.....|.|||......|
  Rat   331 DEKHNQIILDLAVYRYMDTSLIEVDVQPTYVRVMVKGKPFQLALSAEVQPDSSSAKRSQTTGHLL 395

  Fly   848 LTPPAAPGTPVPGTTSPSPSTTIISTLPVPATASSNASRPTSSKQRSR 895
            :..|.. |..:.|..:|....|        |:.||........||..|
  Rat   396 ICMPKV-GEMITGQQTPMSVKT--------ASESSKEQTKPRRKQVER 434

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.