DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13708 and Lrguk

DIOPT Version :10

Sequence 1:NP_647933.1 Gene:CG13708 / 38582 FlyBaseID:FBgn0035577 Length:1301 Species:Drosophila melanogaster
Sequence 2:XP_017448017.1 Gene:Lrguk / 296968 RGDID:1308226 Length:1271 Species:Rattus norvegicus


Alignment Length:817 Identity:160/817 - (19%)
Similarity:267/817 - (32%) Gaps:325/817 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   422 LHNSNLSLYGGCGEEEESPSVMTSISALEQLSIKNKQLS---------------------LSASY 465
            |...|||     |...|..|.::.:..|.:|:....:|:                     :|..|
  Rat   150 LQKLNLS-----GNRIEDLSCVSCMPYLLELNASQNRLTTFFNFKPPQNLKQKVDFSSNQISEMY 209

  Fly   466 G-SIFQQLVFLDLYDNQIERIANLDGLPSLSVLLLGKNRITDIGGLSSLKDTLRVLDLHGNKLTS 529
            . |.:..|..|.|.:|:||.|..|:...||:.|.|..||||.|.||.:|  .::||.:..|::.:
  Rat   210 DLSAYHTLTQLILDNNEIEEITGLEKCISLTHLSLAGNRITTIKGLGTL--PIKVLSVSNNQIET 272

  Fly   530 LGSRINCLQQLKSL-------------------------NLAGNQIRQINQQDFL-GLRCLRELN 568
                |..|::||:|                         ||..|:|:::::.::: .|..||.||
  Rat   273 ----ITGLEELKALQNLDLSHNQISSLHGLENHDLLEVINLEDNKIKELSEIEYIENLPILRVLN 333

  Fly   569 LKRN-------------------------------KLRRINGFQ-------------HLV----- 584
            |.||                               |:..:|.:.             |:|     
  Rat   334 LLRNPIQTKPEYWFFVIFMLLRLTELDQQKIKVEEKVYAVNKYDPPPEVVAAQDHMTHVVNSMSQ 398

  Fly   585 ----------ALE-------------------------------RLWLCHN------------DL 596
                      :|:                               |...||.            |.
  Rat   399 PQRIFDSTLPSLDAPYPMLILTGPEACGKRELAHRLCRQFSTYFRYGACHTTRPPYFGEGDRVDY 463

  Fly   597 HRV-----DDMASIARATRLLEVTIENNPVSLAGDCV--------------------SFLVSYLP 636
            |.|     |:|.|:.:.  :|.....|:...|..|.|                    |...||..
  Rat   464 HFVSQEVFDEMLSMGKF--ILTFNYGNHNYGLNRDTVEGIARDGLASCIHMELEGIRSLKYSYFE 526

  Fly   637 ----LLQTLSQMPITEQVRRAALAWRQHKEQAQAAPGSSEAYHNIRRE-----EVISNA------ 686
                |:..:.:......:||..|..|   .:.:.|....:.|..:.|:     :.:.||      
  Rat   527 PRYILVVPMDKEKYEGYLRRKGLFSR---AEIEIAVSRVDLYVKVNRKFPGYFDAVINADDLDIA 588

  Fly   687 -RTNWELLR---------------------SQQTVVGRPKSRLTS--ELAKIN------------ 715
             :...||:|                     |::||.|.|...:.|  .||::.            
  Rat   589 YQKLSELIREYLGLTETAKKGLAPTAGASSSKKTVSGVPAHLVPSPRRLARLQADGQKTEAFLEV 653

  Fly   716 ------ESNEGPAGEEGEMESEESQQPKELMDELQALIKLPPIAKDLRNP--HEEDGASSEASSL 772
                  ..|:.|...:.:..:||.:.||:  :...:.:.||...:|: :|  .||||   :.::|
  Rat   654 QPHAMIPENQNPTLPQSQDLTEEGEAPKK--EASPSHLDLPQQTQDI-SPKVKEEDG---QPANL 712

  Fly   773 GPNVDS------------------CSSCYSSDNEDGGAKNKPQTPQIDENSNKVGLTEKPPSSP- 818
            .|.:.:                  .|:..|.:.....|...|.:||:|::... |.|:..|::| 
  Rat   713 PPKITTETEGPEDEPVPPVLEAGQSSTMASQEPPQHPAPAPPLSPQLDQDKES-GETKVTPNNPA 776

  Fly   819 VTVASQSPEVAIVTP---------SAPVSSSP--------------------SPPALTLTPPAA- 853
            ::..:|.|:.|.|:|         ||.::||.                    |.|:|....|.| 
  Rat   777 LSEPAQGPDPASVSPQRVQDEGAESANLASSSSTHNLPEDPSHAEIEKPTVGSQPSLKEETPKAE 841

  Fly   854 ---PGTPVPGTTSPSPSTTIISTLPVPATASSNASRPTSSKQRSRHAPITQLGLQINQRGGAAAS 915
               ..||.|....|..|:|.:...||.....|..: ||...|....||:               .
  Rat   842 VMRASTPYPEIPPPQDSSTKVREQPVALLPRSRLA-PTRLPQPQTLAPL---------------Q 890

  Fly   916 SKRYMAGSLVRAQTVSSSTSNSSSSNSAGRGKATNNG 952
            |:|.....|..::..:..||:..:.|.:.|...|.:|
  Rat   891 SRRPTPKLLSPSREEALGTSSEQTPNPSPRSLPTQDG 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13708NP_647933.1 leucine-rich repeat 449..471 CDD:275380 6/43 (14%)
PPP1R42 467..661 CDD:455733 68/350 (19%)
leucine-rich repeat 472..493 CDD:275380 8/20 (40%)
leucine-rich repeat 494..516 CDD:275380 11/21 (52%)
leucine-rich repeat 517..539 CDD:275380 5/21 (24%)
leucine-rich repeat 540..563 CDD:275380 8/48 (17%)
leucine-rich repeat 564..585 CDD:275380 11/79 (14%)
leucine-rich repeat 611..637 CDD:275380 8/49 (16%)
LrgukXP_017448017.1 LRR 96..>340 CDD:443914 53/200 (27%)
leucine-rich repeat 129..149 CDD:275380
leucine-rich repeat 150..171 CDD:275380 7/25 (28%)
leucine-rich repeat 172..194 CDD:275380 3/21 (14%)
leucine-rich repeat 196..216 CDD:275380 3/19 (16%)
leucine-rich repeat 217..238 CDD:275380 8/20 (40%)
leucine-rich repeat 258..281 CDD:275380 7/28 (25%)
leucine-rich repeat 282..300 CDD:275380 1/17 (6%)
leucine-rich repeat 304..328 CDD:275380 5/23 (22%)
GMPK 416..592 CDD:238026 27/180 (15%)
PHA03247 <680..1192 CDD:223021 60/271 (22%)
Blue background indicates that the domain is not in the aligned region.

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