DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13708 and Lrrc46

DIOPT Version :10

Sequence 1:NP_647933.1 Gene:CG13708 / 38582 FlyBaseID:FBgn0035577 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001004201.1 Gene:Lrrc46 / 287653 RGDID:1303311 Length:323 Species:Rattus norvegicus


Alignment Length:364 Identity:78/364 - (21%)
Similarity:135/364 - (37%) Gaps:110/364 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   491 LPSLSVLLLGKNRITDIGGLSSLKDTLRVLDLHGNKLTSLGSRINCLQQLKSLNLAGNQIRQINQ 555
            |..|..:.|....||.||.|..|:: :..|.|..||:..: ..:.|:..|:.|:|||||||.:  
  Rat    47 LDDLETVRLDGEGITCIGNLERLRN-IHSLYLQSNKIQRI-ENLACITSLRFLSLAGNQIRHV-- 107

  Fly   556 QDFLGLRCLRELNLKRNKLRRINGFQHLVALERLWLCHNDLHRVDDMASIARATRLLEVTIENNP 620
            ::.|.|:.|:.|:|..|.:..:                    ::|::..     .||.:.:..||
  Rat   108 ENLLDLQYLQFLDLSENLIETL--------------------KLDELPQ-----SLLILNLCGNP 147

  Fly   621 VSLAGDCVSFLVSYLPLLQTLSQMPITEQVRRAALAWRQHKEQAQAAPGSSEAYHNIRREEVISN 685
            .:........::..||||..|.:.||.|:       |...:|..     ||:       ||    
  Rat   148 CTNQDGYRKMVIGALPLLLDLDKQPILER-------WTSDEEDK-----SSD-------EE---- 189

  Fly   686 ARTNWELLRSQQTVVGRPKSRLTSELAKINESNEGP-AGEEG---EMESE-----ESQQPKELMD 741
                                   .|..::|    || ..|.|   ::|.|     |.:|...|.:
  Rat   190 -----------------------EEFPELN----GPFCAERGFFKDLEQELHQHQERRQQAALTE 227

  Fly   742 ELQALIKLPPIAKDLRNPHEEDGASSEASSLGPNVDSCSSCYSSDNEDGGAKNKPQ---TPQIDE 803
            .|..: :..|:..||              .|.|.|.....|..:..|:.|.:..|:   :.|:..
  Rat   228 HLSRM-ETQPVLTDL--------------PLLPAVPMAGDCSPAVTEEPGKEAAPKATSSTQMAS 277

  Fly   804 NSNKVGLTEKPPSSPVTVASQSPEVAIVTPSAPVSSSPS 842
            :|.|    :.|.:...:|.::...:|.......::::||
  Rat   278 SSKK----QVPRNQKGSVQARKGALAATASKTSLAAAPS 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13708NP_647933.1 leucine-rich repeat 449..471 CDD:275380
PPP1R42 467..661 CDD:455733 43/169 (25%)
leucine-rich repeat 472..493 CDD:275380 1/1 (100%)
leucine-rich repeat 494..516 CDD:275380 8/21 (38%)
leucine-rich repeat 517..539 CDD:275380 5/21 (24%)
leucine-rich repeat 540..563 CDD:275380 11/22 (50%)
leucine-rich repeat 564..585 CDD:275380 4/20 (20%)
leucine-rich repeat 611..637 CDD:275380 5/25 (20%)
Lrrc46NP_001004201.1 LRR 1 49..70 7/20 (35%)
leucine-rich repeat 50..71 CDD:275378 8/20 (40%)
PPP1R42 60..177 CDD:455733 39/152 (26%)
LRR 2 71..92 5/22 (23%)
leucine-rich repeat 72..93 CDD:275378 5/21 (24%)
LRR 3 93..114 10/22 (45%)
leucine-rich repeat 94..115 CDD:275378 11/22 (50%)
LRR 4 115..135 5/39 (13%)
leucine-rich repeat 116..137 CDD:275378 5/45 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..323 12/65 (18%)
Blue background indicates that the domain is not in the aligned region.

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