DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7509 and Lingo3

DIOPT Version :9

Sequence 1:NP_647931.1 Gene:CG7509 / 38579 FlyBaseID:FBgn0035575 Length:615 Species:Drosophila melanogaster
Sequence 2:NP_001103079.1 Gene:Lingo3 / 690755 RGDID:1592209 Length:589 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7509NP_647931.1 LRR_8 182..241 CDD:290566
leucine-rich repeat 187..206 CDD:275380
LRR_RI <201..386 CDD:238064
leucine-rich repeat 207..230 CDD:275380
leucine-rich repeat 231..254 CDD:275380
LRR_8 253..313 CDD:290566
leucine-rich repeat 255..278 CDD:275380
leucine-rich repeat 279..302 CDD:275380
LRR_8 303..361 CDD:290566
leucine-rich repeat 303..326 CDD:275380
leucine-rich repeat 327..350 CDD:275380
LRR_8 349..407 CDD:290566
LRR_4 350..390 CDD:289563
leucine-rich repeat 351..374 CDD:275380
leucine-rich repeat 375..398 CDD:275380
LRR_8 398..>443 CDD:290566
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 423..443 CDD:275380
leucine-rich repeat 471..494 CDD:275380
LRRCT 503..554 CDD:214507
Lingo3NP_001103079.1 LRRNT 23..55 CDD:214470
leucine-rich repeat 34..53 CDD:275380
LRR <55..353 CDD:227223
leucine-rich repeat 55..78 CDD:275380
leucine-rich repeat 79..102 CDD:275380
leucine-rich repeat 103..150 CDD:275380
leucine-rich repeat 151..174 CDD:275380
leucine-rich repeat 175..198 CDD:275380
leucine-rich repeat 199..222 CDD:275380
leucine-rich repeat 223..246 CDD:275380
LRR_8 246..302 CDD:404697
leucine-rich repeat 247..270 CDD:275380
leucine-rich repeat 271..292 CDD:275380
leucine-rich repeat 295..316 CDD:275380
leucine-rich repeat 319..342 CDD:275380
PCC 331..>405 CDD:188093
Ig 407..489 CDD:416386
Ig strand A' 413..417 CDD:409353
Ig strand B 423..432 CDD:409353
Ig strand C 437..442 CDD:409353
Ig strand C' 445..447 CDD:409353
Ig strand D 456..459 CDD:409353
Ig strand E 462..469 CDD:409353
Ig strand F 475..483 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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