DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7509 and Lrrtm4

DIOPT Version :9

Sequence 1:NP_647931.1 Gene:CG7509 / 38579 FlyBaseID:FBgn0035575 Length:615 Species:Drosophila melanogaster
Sequence 2:XP_017448300.1 Gene:Lrrtm4 / 500219 RGDID:1560707 Length:591 Species:Rattus norvegicus


Alignment Length:410 Identity:101/410 - (24%)
Similarity:164/410 - (40%) Gaps:88/410 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 LATGSQIEWNHCTSGVCRCNPDTKSFTCWNTNLKSVPVTQVIPMNMVNIDLSRNILSTLHKDTFR 202
            :.||:|   ..|... |||  |.|...|.:.....:|  :.|......:.|..|.:..|..:.|.
  Rat    27 MLTGAQ---RACPKN-CRC--DGKIVYCESHAFADIP--ENISGGSQGLSLRFNSIQKLKSNQFA 83

  Fly   203 GLTVLKELDISHNVLDFLPFDLFQDLDSLLVLRIQNNQLEDIDHRTFWKLRNLNILDLSKNEIGM 267
            ||..|..|.:.||.:..:..|.||.:..|..|.:.:|::..:.::||..:.||..||||.|::..
  Rat    84 GLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRNLDLSYNKLQT 148

  Fly   268 LPESIFYHAQRLTVINMCDNQIQNFPPNLLRDQLMLEELDMSRNKISELSSGSIRYLTKLKTLDF 332
            |....|...::|.::::..|.::..|..:.:|...|:.||:..|::..||..:...|.|||.|..
  Rat   149 LQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKELHL 213

  Fly   333 GWNQIAKIDDDFFAGLRSLRTLSLHNNRISSLSGTIFNNLANLVTLDLTTNRISHIDGNAFVELN 397
            ..||.:||:...|..|.:||::.|..|||.|:|..:....::|.||||:.|.|..|:...|..|.
  Rat   214 EHNQFSKINFAHFPRLFNLRSIYLQWNRIRSVSQGLTWTWSSLHTLDLSGNDIQAIEPGTFKCLP 278

  Fly   398 NLNELFLGQNSMSSIPADLFLNVSALTRLTLFSNNLTTLEADDFQGLNNLKILLLNNNILKNFDA 462
            |                                                                
  Rat   279 N---------------------------------------------------------------- 279

  Fly   463 RAFEPLSQLEKLRIDSNKLMFLPHGALHGLKNLVAVKLDKNPWHCDCRALYLARWIREFVLKLWD 527
                    |:||.:|||||..:....::...:|:::.|..|.|.|......|..|::.|     .
  Rat   280 --------LQKLNLDSNKLTNVSQETVNAWISLISITLSGNMWECSRSICPLFYWLKNF-----K 331

  Fly   528 GQQP---MCRGPGDLGGHEV 544
            |.:.   :|.||..:.|.:|
  Rat   332 GNKESTMICAGPKHIQGEKV 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7509NP_647931.1 LRR_8 182..241 CDD:290566 16/58 (28%)
leucine-rich repeat 187..206 CDD:275380 6/18 (33%)
LRR_RI <201..386 CDD:238064 59/184 (32%)
leucine-rich repeat 207..230 CDD:275380 7/22 (32%)
leucine-rich repeat 231..254 CDD:275380 5/22 (23%)
LRR_8 253..313 CDD:290566 17/59 (29%)
leucine-rich repeat 255..278 CDD:275380 8/22 (36%)
leucine-rich repeat 279..302 CDD:275380 4/22 (18%)
LRR_8 303..361 CDD:290566 21/57 (37%)
leucine-rich repeat 303..326 CDD:275380 7/22 (32%)
leucine-rich repeat 327..350 CDD:275380 9/22 (41%)
LRR_8 349..407 CDD:290566 19/57 (33%)
LRR_4 350..390 CDD:289563 16/39 (41%)
leucine-rich repeat 351..374 CDD:275380 8/22 (36%)
leucine-rich repeat 375..398 CDD:275380 10/22 (45%)
LRR_8 398..>443 CDD:290566 1/44 (2%)
leucine-rich repeat 399..422 CDD:275380 0/22 (0%)
leucine-rich repeat 423..443 CDD:275380 0/19 (0%)
leucine-rich repeat 471..494 CDD:275380 8/22 (36%)
LRRCT 503..554 CDD:214507 12/45 (27%)
Lrrtm4XP_017448300.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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