DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7509 and Lrt

DIOPT Version :9

Sequence 1:NP_647931.1 Gene:CG7509 / 38579 FlyBaseID:FBgn0035575 Length:615 Species:Drosophila melanogaster
Sequence 2:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster


Alignment Length:550 Identity:120/550 - (21%)
Similarity:198/550 - (36%) Gaps:160/550 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 KRVRQIESRLRSVEQ------PV------WHL--ATG---SQIEWNHCTSGVCRCNPDTKSFTCW 166
            |.|.:...|.|..||      ||      |..  .||   :::|.........|||.|.......
  Fly   101 KYVNKSSPRKRKAEQVSSLPLPVDDALMEWKCPNITGTRNAELECGCDLPHTLRCNIDLHGMMLL 165

  Fly   167 NTNLKSVPVT-QVIPMNMVNID-----------------LSRNILSTLHKDTFRG---------- 203
            ...|::.|.: .::..::.|:.                 :|...:..:||..|.|          
  Fly   166 ADRLRTSPYSISLLDCSLRNVTFLSDAKIFDNVSLHGLVISSGEIKRVHKSAFLGIRGPLQALGL 230

  Fly   204 ---------------LTVLKELDISHNVLDFLPFDLFQDLDSLLVLRIQNNQLEDIDHRTFWKLR 253
                           |:.|:.||:::|.:..|....|..|.||:.|.:.|||:..|..|||..||
  Fly   231 PGNALMSVPWNALSTLSALERLDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLR 295

  Fly   254 NLNILDLSKNEIGMLPESIFYHAQRLTVINMCDNQIQNFPPNLLRDQLMLEELDMSRNKISELSS 318
            .|.:|.|..|.:|       .:||.|..::.|               |.|.:||:..|.::    
  Fly   296 KLEVLKLGGNRLG-------DYAQSLRSLSQC---------------LSLRQLDLQANNLN---- 334

  Fly   319 GSIRYLTKLKTLDFGWNQIAKIDDDFFAGLRSLRTLSLHNNRISSLSGTIFNNLANLVTLDLTTN 383
                               ..:.:....|:|:|.:|:|:.|.|.|:......|.:.||:|.|..|
  Fly   335 -------------------GPLSEQTLPGMRNLESLNLNRNLIKSIQNKALANFSRLVSLSLRHN 380

  Fly   384 RISHIDGNAFVELNNLNELFLGQNSMSSIPADLFLNVSALTRLTLFSNNLTTLEADDFQGLNNLK 448
            :|..:..:|                        |..:.||..|.|..|.:..:.:...|.|:.|.
  Fly   381 QIDVLQDHA------------------------FFGLGALDSLDLSYNGIVAISSASLQHLSRLT 421

  Fly   449 ILLLNNNILKNFDARAFEPLSQLEKLRIDSNKLMFLPHGALHGLKNLVAVKLDKNPWHCDCRALY 513
            :|.|.:|.|:...:....||..|.:||:..|.:..:...|:.|.:.|.::::.:||..|||....
  Fly   422 VLDLTHNFLRALTSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDCSIRP 486

  Fly   514 LARWIREFVLKLWDGQQPMCRGPGDLGGHEVGLLRYDDLCDGQWASMLSLSPRLPVRKHQISTPM 578
            .|.|::|  .:|.......|..|..|.|                      :|.|.|....:|..|
  Fly   487 FAEWLQE--SQLHSSLSASCVTPPRLEG----------------------APLLQVPVETLSCDM 527

  Fly   579 NYTDYFNL-YLKHIYNGTTDEELKEADITS 607
            :..:..|. .::|:      |.|.:.:.||
  Fly   528 DNVEKDNANIMQHL------ETLAKPNQTS 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7509NP_647931.1 LRR_8 182..241 CDD:290566 19/100 (19%)
leucine-rich repeat 187..206 CDD:275380 6/60 (10%)
LRR_RI <201..386 CDD:238064 50/209 (24%)
leucine-rich repeat 207..230 CDD:275380 7/22 (32%)
leucine-rich repeat 231..254 CDD:275380 10/22 (45%)
LRR_8 253..313 CDD:290566 15/59 (25%)
leucine-rich repeat 255..278 CDD:275380 6/22 (27%)
leucine-rich repeat 279..302 CDD:275380 2/22 (9%)
LRR_8 303..361 CDD:290566 10/57 (18%)
leucine-rich repeat 303..326 CDD:275380 4/22 (18%)
leucine-rich repeat 327..350 CDD:275380 1/22 (5%)
LRR_8 349..407 CDD:290566 15/57 (26%)
LRR_4 350..390 CDD:289563 13/39 (33%)
leucine-rich repeat 351..374 CDD:275380 7/22 (32%)
leucine-rich repeat 375..398 CDD:275380 7/22 (32%)
LRR_8 398..>443 CDD:290566 6/44 (14%)
leucine-rich repeat 399..422 CDD:275380 1/22 (5%)
leucine-rich repeat 423..443 CDD:275380 4/19 (21%)
leucine-rich repeat 471..494 CDD:275380 6/22 (27%)
LRRCT 503..554 CDD:214507 13/50 (26%)
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 46/204 (23%)
leucine-rich repeat 179..199 CDD:275378 1/19 (5%)
leucine-rich repeat 200..223 CDD:275380 5/22 (23%)
leucine-rich repeat 225..248 CDD:275380 1/22 (5%)
LRR_8 249..307 CDD:290566 23/57 (40%)
leucine-rich repeat 249..272 CDD:275380 7/22 (32%)
LRR_RI <270..479 CDD:238064 67/277 (24%)
leucine-rich repeat 273..296 CDD:275380 10/22 (45%)
leucine-rich repeat 297..322 CDD:275380 9/46 (20%)
LRR_8 322..382 CDD:290566 18/82 (22%)
leucine-rich repeat 323..347 CDD:275380 5/46 (11%)
leucine-rich repeat 348..371 CDD:275380 7/22 (32%)
LRR_8 370..428 CDD:290566 18/81 (22%)
leucine-rich repeat 372..395 CDD:275380 8/46 (17%)
leucine-rich repeat 396..419 CDD:275380 6/22 (27%)
LRR_8 418..478 CDD:290566 15/59 (25%)
leucine-rich repeat 420..443 CDD:275380 7/22 (32%)
leucine-rich repeat 444..467 CDD:275380 6/22 (27%)
LRRCT 476..526 CDD:214507 17/73 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.