DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7509 and lrrc40

DIOPT Version :9

Sequence 1:NP_647931.1 Gene:CG7509 / 38579 FlyBaseID:FBgn0035575 Length:615 Species:Drosophila melanogaster
Sequence 2:NP_956156.2 Gene:lrrc40 / 334130 ZFINID:ZDB-GENE-030131-6062 Length:601 Species:Danio rerio


Alignment Length:567 Identity:131/567 - (23%)
Similarity:209/567 - (36%) Gaps:193/567 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 FDLVKRVRQ-----IESR-LRSVEQPVWHL------------ATGSQIEWNHCTSGVCRCNPDTK 161
            :.|:|..|:     :..| |..|...||.|            :.|::..|...|        |..
Zfish    27 YGLLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQT--------DLT 83

  Fly   162 SFTCWNTNLKSVPVTQVIPMNMVNIDLSRNILSTLHKDTFRGLTVLKELDISHNVLDFLPFDLFQ 226
            .....:..|:|:|....:...:|.:|:..|.||:| .|:...|..|::|.:|||.|..||..:::
Zfish    84 KLLLSSNKLQSIPDDVKLLPALVVLDIHDNQLSSL-PDSIGDLEQLQKLILSHNKLTELPSGVWR 147

  Fly   227 DLDSLLVLRIQNNQLEDIDHRTFWKLRNLNILDLSKNEIGMLPESIFYHAQRLTVINMCDNQIQN 291
             |.:|..|.:|.|.:|.|. |...:|.||:.||||.|.:..:|||: .:.|.|..:::..|::::
Zfish   148 -LTNLRCLHLQQNLIEQIP-RDLGQLVNLDDLDLSNNHLIDIPESL-ANLQNLVKLDLSCNKLKS 209

  Fly   292 FPPNLLRDQLMLEELDMSRNKISE---------------LSSGSIRYLTK------LKTLDFGWN 335
            .|| .:.....|..||.|||::..               |....:|||.:      ||.|..|.|
Zfish   210 LPP-AISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLPELPCCKTLKELHCGNN 273

  Fly   336 QIAKIDDDFFAGLRSLRTLSLHNNRISSLSGTIFNNLANLVTLDLTTNRISH------------- 387
            ||..::.:....|.:|..|.|.:|::.||...| ..|..|..||||.|.||.             
Zfish   274 QIEVLEAEHLKHLNALSLLELRDNKVKSLPEEI-TLLQGLERLDLTNNDISSLPCGLGTLPKLKS 337

  Fly   388 ----------------------------------------------------------------- 387
                                                                             
Zfish   338 LSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTFQSQAKINIHAIKTLKT 402

  Fly   388 ------------------IDGNAFVELN------------------NLNELFLGQNSMSSIPADL 416
                              :|||....:|                  .|.::.||.|.:::|||| 
Zfish   403 LDYSEKQDASIPDDVLDAVDGNPVANVNFSKNQLTAVPHRIVDLKDTLADINLGFNKLTTIPAD- 466

  Fly   417 FLNVSALTRLTLFSNNLTTLEADDFQGLNNLKILLLNNNILKNF--------------------- 460
            |.::..|..:.|.:|.|.:|.. :.:||..|:.::|:.|..|:|                     
Zfish   467 FCHLKQLMHIDLRNNLLISLPM-ELEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVG 530

  Fly   461 --DARAFEPLSQLEKLRIDSNKLMFLPHGALHGLKNLVAVKLDKNPW 505
              ||...:.||:|..|.:.:|.:|.:| ..|....:|.|:.||.||:
Zfish   531 GIDAVQMKTLSRLSTLDLSNNDIMQVP-PELGNCTSLRALMLDGNPF 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7509NP_647931.1 LRR_8 182..241 CDD:290566 21/58 (36%)
leucine-rich repeat 187..206 CDD:275380 7/18 (39%)
LRR_RI <201..386 CDD:238064 65/205 (32%)
leucine-rich repeat 207..230 CDD:275380 9/22 (41%)
leucine-rich repeat 231..254 CDD:275380 8/22 (36%)
LRR_8 253..313 CDD:290566 21/59 (36%)
leucine-rich repeat 255..278 CDD:275380 9/22 (41%)
leucine-rich repeat 279..302 CDD:275380 4/22 (18%)
LRR_8 303..361 CDD:290566 22/78 (28%)
leucine-rich repeat 303..326 CDD:275380 10/37 (27%)
leucine-rich repeat 327..350 CDD:275380 8/22 (36%)
LRR_8 349..407 CDD:290566 23/171 (13%)
LRR_4 350..390 CDD:289563 16/135 (12%)
leucine-rich repeat 351..374 CDD:275380 8/22 (36%)
leucine-rich repeat 375..398 CDD:275380 12/136 (9%)
LRR_8 398..>443 CDD:290566 14/44 (32%)
leucine-rich repeat 399..422 CDD:275380 9/22 (41%)
leucine-rich repeat 423..443 CDD:275380 5/19 (26%)
leucine-rich repeat 471..494 CDD:275380 6/22 (27%)
LRRCT 503..554 CDD:214507 2/3 (67%)
lrrc40NP_956156.2 LRR 1 33..56 6/22 (27%)
LRR 2 79..101 5/29 (17%)
LRR_8 82..138 CDD:290566 16/56 (29%)
leucine-rich repeat 82..104 CDD:275380 3/21 (14%)
LRR_RI 99..343 CDD:238064 74/249 (30%)
LRR 3 102..124 7/22 (32%)
leucine-rich repeat 105..127 CDD:275380 8/22 (36%)
LRR 4 125..148 9/23 (39%)
LRR_8 127..184 CDD:290566 24/58 (41%)
leucine-rich repeat 128..150 CDD:275380 9/22 (41%)
LRR 5 150..170 7/20 (35%)
leucine-rich repeat 151..173 CDD:275380 8/22 (36%)
LRR 6 171..193 11/22 (50%)
leucine-rich repeat 174..196 CDD:275380 9/22 (41%)
LRR 7 194..217 5/23 (22%)
LRR_8 196..253 CDD:290566 11/57 (19%)
leucine-rich repeat 197..219 CDD:275380 4/22 (18%)
LRR 8 219..239 6/19 (32%)
leucine-rich repeat 220..242 CDD:275380 6/21 (29%)
LRR 9 240..264 4/23 (17%)
leucine-rich repeat 243..288 CDD:275380 12/44 (27%)
LRR_8 263..322 CDD:290566 22/59 (37%)
LRR 10 266..285 6/18 (33%)
LRR 11 286..308 8/22 (36%)
leucine-rich repeat 289..311 CDD:275380 8/22 (36%)
LRR 12 309..334 9/24 (38%)
leucine-rich repeat 335..354 CDD:275380 0/18 (0%)
LRR 13 336..355 0/18 (0%)
LRR 14 397..420 0/22 (0%)
leucine-rich repeat 400..449 CDD:275380 4/48 (8%)
LRR 15 423..446 3/22 (14%)
LRR 16 447..469 9/22 (41%)
LRR_8 449..506 CDD:290566 19/58 (33%)
leucine-rich repeat 450..472 CDD:275380 9/22 (41%)
LRR 17 470..492 5/22 (23%)
leucine-rich repeat 473..495 CDD:275380 7/22 (32%)
LRR 18 493..516 6/22 (27%)
leucine-rich repeat 496..518 CDD:275380 5/21 (24%)
LRR_8 517..576 CDD:290566 15/59 (25%)
LRR 19 518..539 2/20 (10%)
leucine-rich repeat 519..542 CDD:275380 3/22 (14%)
LRR 20 540..563 8/23 (35%)
leucine-rich repeat 543..565 CDD:275380 6/22 (27%)
LRR 21 565..586 6/12 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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