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Protein Alignment CG7509 and haf

DIOPT Version :9

Sequence 1:	NP_647931.1	Gene:	CG7509 / 38579	FlyBaseID:	FBgn0035575	Length:	615	Species:	Drosophila melanogaster
Sequence 2:	NP_001356954.1	Gene:	haf / 33339	FlyBaseID:	FBgn0261509	Length:	1347	Species:	Drosophila melanogaster

Alignment Length:	383	Identity:	101/383 - (26%)
Similarity:	164/383 - (42%)	Gaps:	61/383 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly   240 QLEDIDH-------RTFWKLRNLNILDLSKNEIGMLPESIFYHAQRLTVINM----CDNQIQNFP 293
            |.:.:|.       .|..:|:.:::|.::.:.|..||:::|   ..|::.|:    |.  ||...
  Fly    61 QCDQVDFSQLLAAMNTHARLKPVDLLYVNNSTISELPDAVF---SNLSLHNLQLSSCG--IQRIA 120

  Fly   294 PNLLRDQ-LMLEELDMSRNKISELSSGSIRYLTKLKTLDFGWNQIAKIDDDFFAGLRSLRTLSLH 357
            ....:.| .:|..|::..|.::::...:::.|.||..||...||::.|.||.|.||..|.||.|:
  Fly   121 TGAFKGQESVLRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDAFVGLTKLSTLKLN 185

  Fly   358 NNRISSLSGTIFNNL-ANLVTLDLTTNRISHIDGNAFVELNNLNELFLGQNSMSSIPA----DLF 417
            :|.: :|:...|..| .:|..|:|...:...:. .:...|.:|..|.|.||.:..:|.    .:|
  Fly   186 DNNV-TLASNAFRGLEQSLKNLNLKGTKQRKVP-ESIRGLKSLAFLDLSQNGIKELPGAGGIRVF 248

  Fly   418 LNVSALTRLTLFSNNLTTLEADDFQGL-NNLKILLLNNNILKNFDARAFEPLSQLEKLRIDSNKL 481
            ..:.|||.|.|..|.:.::....|.|: ..|..|.|.||:|..|...|...|.:|..|.|..|.|
  Fly   249 DGLDALTALNLERNLIQSIGETAFAGVRKTLSSLSLLNNLLAEFPIGAVHSLKELRVLDIGFNLL 313

  Fly   482 MFLPHGALHGLKNLVAVKLDKNP-------------------------WHCDCRALYLARWIREF 521
            ..||..|..|...:..:.||.||                         .||||:..::|.|||..
  Fly   314 TSLPEAAFRGNPGITLLALDGNPLSSVPEGAFAHLNATLRGLSLGGRFLHCDCKLRWVAEWIRNG 378

  Fly   522 VLKLWDGQQ--PMCRGP---GDLGGHEV--GLLRYDDLCD----GQWASMLSLSPRLP 568
            .|::...::  ..|..|   .|.|.:.:  ..|...|:.|    |......:|.|.||
  Fly   379 DLQVTSRERNPQFCGTPPRFRDRGFYSIQPEELSCPDIADAALRGPVGLADNLKPTLP 436

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.