DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7509 and lrrtm1

DIOPT Version :9

Sequence 1:NP_647931.1 Gene:CG7509 / 38579 FlyBaseID:FBgn0035575 Length:615 Species:Drosophila melanogaster
Sequence 2:XP_002935525.1 Gene:lrrtm1 / 100493874 XenbaseID:XB-GENE-966481 Length:521 Species:Xenopus tropicalis


Alignment Length:488 Identity:120/488 - (24%)
Similarity:198/488 - (40%) Gaps:113/488 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 CTSGV---------------CRCNPDTKSFTCWNTNLKSVPVTQVIPMNM---VNIDLSRNILST 195
            ||.||               |||  :.:...|.:.|     ||: ||.|:   :.:.|..|.||.
 Frog    23 CTLGVFVKMLPLVNSGCPRLCRC--EGRFLYCESQN-----VTE-IPHNLSGVMGLSLRYNSLSE 79

  Fly   196 LHKDTFRGLTVLKELDISHNVLDFLPFDLFQDLDSLLVLRIQNNQLEDIDHRTFWKLRNLNILDL 260
            |....|.||..|..|.:.||.:..:..:.|..|..:..|.:.:|::..:.:.||..:.||..:||
 Frog    80 LQDGQFTGLIQLTWLYLDHNHIHTVEGNAFHKLRRVKELTLSSNKITHLANTTFRPMPNLRSVDL 144

  Fly   261 SKNEIGMLPESIFYHAQRLTVINMCDNQIQNFPPNLLRDQLMLEELDMSRNKISELSSGSIRYLT 325
            |.|.:..|...:|:..::||.::|..|.|:..|..:.:|                        ..
 Frog   145 SNNNLQSLEADLFHGLRKLTTLHMRYNAIKFVPVRIFQD------------------------CR 185

  Fly   326 KLKTLDFGWNQIAKIDDDFFAGLRSLRTLSLHNNRISSLSGTIFNNLANLVTLDLTTNRISHIDG 390
            .||.||.|:||:..:..:.||||..|..|.|.:|                   ||....::|   
 Frog   186 SLKFLDLGYNQLKSLARNSFAGLFKLTELHLEHN-------------------DLVKVNLAH--- 228

  Fly   391 NAFVELNNLNELFLGQNSMSSIPADLFLNVSALTRLTLFSNNLTTLEADDFQGLNNLKILLLNNN 455
              |..|.:|:.||:.:|                 ::|:..|:|      ||  :..|:.:.|:.|
 Frog   229 --FPRLLSLHSLFMRRN-----------------KVTIVVNSL------DF--VWKLEKMDLSGN 266

  Fly   456 ILKNFDARAFEPLSQLEKLRIDSNKLMFLPHGALHGLKNLVAVKLDKNPWHCDCRALYLARWIRE 520
            .::..:...||.|..||.|::|||:|.::....|:..|:|.::.|..|.|.|......||.|:..
 Frog   267 EIEYIEPHVFESLPHLESLQLDSNRLTYVDPRILNSWKSLSSITLAGNNWDCGRNVCALASWLSA 331

  Fly   521 FVLKLWDGQQPMCRGPGDLGGHEV-GLLRYDDLCDGQWASMLSLSPRLPVRKHQISTPMNYTDYF 584
            |..:. ||.. :|..|....|.:| ..:.:..|||         .|..|...:.|||.:|.:|..
 Frog   332 FKGRC-DGNM-LCTTPEYAQGEDVLDAVYFFRLCD---------DPVDPTSANAISTALNNSDRI 385

  Fly   585 NL--YLKHIYNGTTDEELKEADITSVSIKKVHN 615
            .:  .....||....|..:..::.:.::...|:
 Frog   386 AIDSPTATSYNVQDTEGERTTNVQTATVANEHH 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7509NP_647931.1 LRR_8 182..241 CDD:290566 17/61 (28%)
leucine-rich repeat 187..206 CDD:275380 8/18 (44%)
LRR_RI <201..386 CDD:238064 45/184 (24%)
leucine-rich repeat 207..230 CDD:275380 6/22 (27%)
leucine-rich repeat 231..254 CDD:275380 4/22 (18%)
LRR_8 253..313 CDD:290566 15/59 (25%)
leucine-rich repeat 255..278 CDD:275380 7/22 (32%)
leucine-rich repeat 279..302 CDD:275380 7/22 (32%)
LRR_8 303..361 CDD:290566 15/57 (26%)
leucine-rich repeat 303..326 CDD:275380 0/22 (0%)
leucine-rich repeat 327..350 CDD:275380 11/22 (50%)
LRR_8 349..407 CDD:290566 12/57 (21%)
LRR_4 350..390 CDD:289563 7/39 (18%)
leucine-rich repeat 351..374 CDD:275380 4/22 (18%)
leucine-rich repeat 375..398 CDD:275380 5/22 (23%)
LRR_8 398..>443 CDD:290566 9/44 (20%)
leucine-rich repeat 399..422 CDD:275380 4/22 (18%)
leucine-rich repeat 423..443 CDD:275380 5/19 (26%)
leucine-rich repeat 471..494 CDD:275380 8/22 (36%)
LRRCT 503..554 CDD:214507 14/51 (27%)
lrrtm1XP_002935525.1 LRRNT 38..>61 CDD:214470 7/30 (23%)
LRR 53..>316 CDD:227223 86/341 (25%)
leucine-rich repeat 70..90 CDD:275380 8/19 (42%)
leucine-rich repeat 91..114 CDD:275380 6/22 (27%)
LRR_8 114..173 CDD:338972 16/58 (28%)
leucine-rich repeat 115..138 CDD:275380 4/22 (18%)
leucine-rich repeat 139..162 CDD:275380 7/22 (32%)
leucine-rich repeat 163..186 CDD:275380 7/46 (15%)
leucine-rich repeat 187..210 CDD:275380 11/22 (50%)
leucine-rich repeat 211..234 CDD:275380 9/46 (20%)
leucine-rich repeat 235..257 CDD:275380 9/46 (20%)
leucine-rich repeat 258..281 CDD:275380 6/22 (27%)
leucine-rich repeat 282..300 CDD:275380 7/17 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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