DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF64C and arhgef3.1

DIOPT Version :9

Sequence 1:NP_001261425.1 Gene:RhoGEF64C / 38578 FlyBaseID:FBgn0035574 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_001027503.1 Gene:arhgef3.1 / 613095 XenbaseID:XB-GENE-5940983 Length:526 Species:Xenopus tropicalis


Alignment Length:548 Identity:127/548 - (23%)
Similarity:215/548 - (39%) Gaps:138/548 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1458 RGLAREESFDYGNNPKIIEEEAADTLSDLDKRQAEERERDRDSGQSSMSS-------LSPPPHNF 1515
            ||.|.:||    ..|    ||..:|.|.:    ..:|||...||..|.||       :.|||   
 Frog    15 RGCAMDES----EGP----EEKEETESWI----PVQRERSYTSGSLSESSGLKRRKQVEPPP--- 64

  Fly  1516 ICGGAGKSSGSDVERQD--SGVGSETSKTSRSKYQATPTVLHLCEDCDGAVEMQVG---DNGILY 1575
                     |...|.::  |......|||..:.....|..:...:....:::..:|   ::.:..
 Frog    65 ---------GQVAEEKEPSSKRVKPVSKTLSASGAPPPAKVTPLKKLSLSIQKSIGCKSESRLFS 120

  Fly  1576 APLVCRK----CGKKR---------------------VERKEIITEIVETEEKYGRDLQIILEEF 1615
            .|...|.    .|.||                     ::|:|:|.|:::.|.....||.::.:.:
 Frog   121 FPPRTRSREPGGGAKRRSSKLWRETFDSAGEELSAREIKRQEVIFELMQGEHTLIEDLNLVRKNY 185

  Fly  1616 CHPMLVAGLLTQEQLSAIFLNTEDLLENNQTLAERMRDALDMSLEQGDDDLLTVNIGRIFLDFTQ 1680
            ..|||...:|::|:|..||...:.|...:|.|.||:   |.:.||.|..::    ||...|::..
 Frog   186 YEPMLKLEILSREELEQIFGILDSLAPLHQDLLERL---LKLRLEDGTLEV----IGPTMLEWLP 243

  Fly  1681 MLHAFESYCVRQAGASLLLANLEKEKELLRIFLKVSQMENAVLRRMNLNSFLMVPVQRVTKYPLL 1745
            .|||:::||..|..|..||.: ::....::.||::.| |:|..|::::.|||.:|..|:.|||||
 Frog   244 CLHAYKTYCCNQVAAKSLLDH-KRRCAAVQNFLRLCQ-ESAFSRKLDVWSFLDLPRSRLVKYPLL 306

  Fly  1746 LARLYKVT-PSHLEGRELLKQAQEKIELHLNHINQEAKDVPTKLWRR-------------ISSSS 1796
            |..|.|.| |.|.:... |.:|...|:..::.||.:..:...:.:||             ::|| 
 Frog   307 LKELLKHTGPEHPDYTP-LGEAVCMIQTIVSLINSKTGEAECEYYRRRLTYLYESQEEGAVTSS- 369

  Fly  1797 PNRRASCEIDMINIKLRKMAIDVLEWNHDEVRFAMEGRLLYTQPTDSNWKKARTIKLTPVNAL-L 1860
              |...|..::.|.|.:::.:           |..|..|:.|:|...|.:....:...|:... |
 Frog   370 --RLLHCHGELKNNKGQRLQV-----------FLFEAALVLTRPITQNHQLQFQVYRQPIPLQEL 421

  Fly  1861 VTNGKPSANYRAEKAMSEKLNFPKHTGIREASLLLVKEKCGRYTLIREPLYLDRCVVCSEADWDD 1925
            |....|....|...::.                       |.:|...|..             .:
 Frog   422 VLEDLPDGEVRVGGSIR-----------------------GAFTPATERA-------------KN 450

  Fly  1926 YFEV--QEISSKDTFIFKAEDGVRTKQW 1951
            :|.|  |:.|...:...:|.|....:||
 Frog   451 FFRVSFQDRSRGQSHTLQANDSFNKQQW 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF64CNP_001261425.1 RhoGEF 1593..1779 CDD:279015 60/186 (32%)
arhgef3.1NP_001027503.1 RhoGEF 163..339 CDD:214619 59/185 (32%)
PH_RhoGEF3_XPLN 353..486 CDD:269976 28/176 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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