DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF64C and arhgef18a

DIOPT Version :9

Sequence 1:NP_001261425.1 Gene:RhoGEF64C / 38578 FlyBaseID:FBgn0035574 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_999983.1 Gene:arhgef18a / 407987 ZFINID:ZDB-GENE-040516-14 Length:940 Species:Danio rerio


Alignment Length:403 Identity:89/403 - (22%)
Similarity:171/403 - (42%) Gaps:100/403 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1577 PLVCRKCGKKRVERKEIITEIVETEEKYGRDLQIILEEFCHPMLVAGLLTQEQLSAIFLNTEDLL 1641
            |...:...|..|:|:::|.|:::||..:.|.|:|:|..:...:.....:.:.:|..:|...|:||
Zfish    58 PQYLKNFSKDAVKRQDVIHELIQTEINHVRTLKIVLNVYIRELRNTLQMDETRLERLFPQVENLL 122

  Fly  1642 ENNQTLAERMR-DALDMSLEQGDDDLLTV-NIGRIFL-DF-----TQMLHAFESYCVRQAGA--- 1695
            |.:|...:.:: ..|| |:|.|......: |:|.|.: .|     :::.:.:..:|.|...|   
Zfish   123 EVHQFFLDNLKLRRLD-SMEPGSSQNYCIHNLGDILITQFSGEIGSRLRYLYGMFCSRHTDAVNF 186

  Fly  1696 -SLLLANLEKEKELLRIFLKVSQMENAVLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTPSH--- 1756
             ..|:.|.:|.:.|:|   |:.|:  :::||:.:...:::..||:||||:|..|:.|.|...   
Zfish   187 YKDLMQNNKKFQNLIR---KICQL--SIVRRLGIPEIILLITQRITKYPVLFERVIKYTEDESEE 246

  Fly  1757 ----LEGRELLKQAQEKIELHLNHINQEA--KDVPTKLWRRISSSSPNRRASCEIDMINIKLRKM 1815
                ::|.:.||....::..|::...:||  :::.:||..:......:.|.....||:..| ||:
Zfish   247 QMDLIKGPDFLKDTIAQVNAHVDEAEKEARLRELSSKLEPKSQVKMTSGRVFRREDMLQGK-RKL 310

  Fly  1816 AIDVLEWNHDEVRFAMEGRLLYTQPTDSNWKKARTIKLTPVNALLVTNGKPSANYRAEKAMSEKL 1880
            .       |       ||.|        ||:              |||.|...:           
Zfish   311 L-------H-------EGML--------NWR--------------VTNNKGKGD----------- 328

  Fly  1881 NFPKHTGI----REASLLLVKEKCGRYT----------------LIREPLYLDRC--VVCSEADW 1923
               |||.:    ....|||:.||..|.|                ::||..:.::.  ::.:..|.
Zfish   329 ---KHTDVIVLLLSDVLLLLLEKDSRLTFASLDGKPAVISLLKLIVREAAHNEKAMFLISASLDT 390

  Fly  1924 DDYFEVQEISSKD 1936
            .:.:|....|:::
Zfish   391 PEMYEFHTSSAEE 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF64CNP_001261425.1 RhoGEF 1593..1779 CDD:279015 50/204 (25%)
arhgef18aNP_999983.1 RhoGEF 74..266 CDD:279015 49/197 (25%)
PH-like 307..427 CDD:302622 28/148 (19%)
DUF4200 650..747 CDD:290574
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5422
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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