DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF64C and cyst

DIOPT Version :9

Sequence 1:NP_001261425.1 Gene:RhoGEF64C / 38578 FlyBaseID:FBgn0035574 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_001260588.1 Gene:cyst / 35237 FlyBaseID:FBgn0032796 Length:1319 Species:Drosophila melanogaster


Alignment Length:956 Identity:187/956 - (19%)
Similarity:331/956 - (34%) Gaps:288/956 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1092 ISSTSSSSTSS--SSSSSGRGRTLIRLDYDRERKGSATSSTP-INTP-PVISSTPATPPPTDLPI 1152
            ::|..|.|:.:  :..|:.||.::...:|          ..| ||.| |..:..|..|||...|.
  Fly    17 LNSNCSESSEALVNGGSTNRGASIESQNY----------CIPVINAPVPGPARAPIAPPPASNPA 71

  Fly  1153 ENA---NPLVPHETELLKILRNPVEAVKLNLVPHVCGLRAPTRESGKSKKIQEEEVSGTPVKDPG 1214
            .|.   |.::|                .:|:.||...|      :.|...|.|:.:|        
  Fly    72 SNTINNNNMIP----------------TINVTPHSPAL------ASKYNNIFEDTLS-------- 106

  Fly  1215 FIAKLLQDPMLGQVAEGLETETVAELIENSLQRLQQARRGIDMSGTKDHDDMNRLISASLQRIRL 1279
                .||:          ..|||.:: :||....|..:.|    ...:|.    |:||::....|
  Fly   107 ----QLQN----------IRETVVQM-KNSSSPSQHMQDG----SLANHG----LLSAAILSTSL 148

  Fly  1280 ERQPATPGISATKEEDRLSNRGSISSANSFA----------------SAHNYELFDFDGGAGG-- 1326
                  |.::.|       ..|..|..:::|                ...::...|...|||.  
  Fly   149 ------PDLTGT-------GTGPASGGSNYAMWSSTAPQQCQFLHTDRRKSWTAVDDGSGAGDCT 200

  Fly  1327 NESDCYQSCSSELTASGILEEDSVSPIKDPETELDAATRAKFYQLLVDATLAEIEHSTHMDQTLG 1391
            |:|....|..||       |::::...:........:|.......|.:|.||.........::|.
  Fly   201 NKSVSLSSLDSE-------EQETIRVTEQRRRSARNSTGGISTHSLNEAELARDFERIAAKRSLA 258

  Fly  1392 TDSEHH---YESIRHSGDPIYEEIHEVPPPLPLSAPPLNDAELEKKAARSIFEGASKYDILSYLV 1453
            |:....   .:||..|.....|:|..:       |..|.|:|.|.   :|:....:|.::    .
  Fly   259 TEIISRIPLQKSISTSSIIAKEDIKAI-------ARHLTDSEDEN---QSLLRAHAKIEV----Y 309

  Fly  1454 DAKERGLAREESFDYGNNPKIIEEE-------------AADTLSDLDKRQAEERERDRDSGQ--- 1502
            |..|:...|...|.....||...:.             ||.||:.:.:...|.:.:....||   
  Fly   310 DTVEKRPKRGSIFFRKKKPKAKTKSLVGGQLSACDVCGAAITLAQIKEHHLECKVKKMGGGQDYY 374

  Fly  1503 -----SSMSSLSPPPHNFICGGAGKSSGSDVERQDSGVGSETSKTSRSKYQATPTVLHLCEDCDG 1562
                 |:.|  :|.....|.......:.:.:|.||.|              |.|.:..:.::.|.
  Fly   375 DGPDASTFS--NPEDQPLIRSDLQFLNEAPIEAQDLG--------------ADPVLGIVLKEHDS 423

  Fly  1563 AVEMQVGDNGILYAPLVCRKCGKK----RVERKEIITEIVETEEKYGRDLQIILEEFCHPMLVAG 1623
                        :.|.|.|:..|.    :::|:|.|.|.:.||:.:           |..::|..
  Fly   424 ------------WTPNVPRELLKTLKDLQIKRQEHIYEFIMTEKHH-----------CQTLIVMQ 465

  Fly  1624 LLTQEQLSAIF--LNTEDLLENNQTLAERMRDAL-DMSLEQGDDDLLTVNIGRIFLDFTQMLHAF 1685
            .:..|.|...|  ||...:....|.|.:.....| .:.|:|.:..::. :|..|.|||..:..| 
  Fly   466 KVFVESLERHFPSLNLNSMFPRLQQLTDLHTCFLRQLRLKQREQHMVD-SIADILLDFFSLEQA- 528

  Fly  1686 ESYCVRQAGASLLLANLEKEKELLRIFLKVSQ--------MENAVLRRMNLNSFLMVPVQRVTKY 1742
              .|:|.|... ..||.....:..::.|....        ::|.:|::..:...::...||:|||
  Fly   529 --QCLRLAYGE-FCANHRSALDQFKLCLTEPSFAEWYKHCLQNPLLKKKGIPECILFVTQRLTKY 590

  Fly  1743 PLLLARLYKVTPSHLEGRELLKQAQEKIELHLNHI------------NQEAKDVPTKLWRRISSS 1795
            |||:..|.|....:       |...:|::..||.:            .:|.::...:::.|:.:.
  Fly   591 PLLIEPLLKSARDN-------KLETDKLQHALNLVKSLLVDVDACVAEKELRERQLEIYGRVDAK 648

  Fly  1796 S-------PNRRASCEIDMINIKLRKMAIDVLEWNHDEVRFAMEGRLLYTQPTDSNWKKARTIKL 1853
            |       |.|:....::    ..|::..|.|       ...|:||             |:|   
  Fly   649 SFAIYKNKPFRKTELGVE----SRRRLKFDGL-------ATLMQGR-------------AKT--- 686

  Fly  1854 TPVNALLVTNGKPSANYRAEKAMSEKLNF--PKH-TGIREASLLLVKEKCGRYTLIREPLYLDRC 1915
               ..:||........:.:|.:...|.:|  |:| .|:.....||::||.|..:   ..:|    
  Fly   687 ---QLVLVVVLTDCLCFLSENSGHNKYSFFTPEHKAGVVPLQKLLIREKAGTES---RGIY---- 741

  Fly  1916 VVCSEADWDDYFEVQEISSKD-----------------TFIFKAED 1944
            ::.|..|:.:.:|::..:.||                 |.|.:|||
  Fly   742 IISSNPDFPEMYELKVQTPKDKNTWIQTIRQAVLDCPATDIIEAED 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF64CNP_001261425.1 RhoGEF 1593..1779 CDD:279015 44/208 (21%)
cystNP_001260588.1 RhoGEF 447..627 CDD:279015 44/202 (22%)
PH_ARHGEF2_18_like 671..774 CDD:275432 26/135 (19%)
PH 681..774 CDD:278594 23/118 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5422
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6371
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.760

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