DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF64C and prhg-1

DIOPT Version :9

Sequence 1:NP_001261425.1 Gene:RhoGEF64C / 38578 FlyBaseID:FBgn0035574 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_001122556.1 Gene:prhg-1 / 190810 WormBaseID:WBGene00022391 Length:628 Species:Caenorhabditis elegans


Alignment Length:616 Identity:113/616 - (18%)
Similarity:201/616 - (32%) Gaps:217/616 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1476 EEEAADTL----SDLDKRQA----EERERDRDSGQSSMSS----------LSP-PPHNF---ICG 1518
            ||....|:    ..|.:|.|    :..|....|.|...||          :|| ..|.|   |..
 Worm    24 EEGEPQTIHPNKEQLSRRHAIIPDQPSENQETSSQGCCSSDNVIIVPHVQISPNESHLFNRAISS 88

  Fly  1519 GAGKSSGSD----VERQDSGVGSET--SKTSRSKYQATPTVLHLCEDCDGAVEMQVGDNGILYAP 1577
            |.|..:.|:    ::.|.:.:.|:.  ::.|..:...:|.:|....:..|               
 Worm    89 GGGLLADSNKITSIDLQRATIASQAFYAEASEPQKNRSPWILKRLYEWSG--------------- 138

  Fly  1578 LVCRKCGKKRVERKEII-------------------------------------TEIVETEEKY- 1604
                     |.:|:|||                                     |.|..::.|| 
 Worm   139 ---------RAKRREIIKHVQAALETSKDHEIEDDELEKLLPVSFEEMFMGDETTTIPSSKHKYL 194

  Fly  1605 --------------GRDLQIILEEFCHPM---LVAGLLTQEQLSAIFLNTEDLLENNQTLAERMR 1652
                          .|.|.::.:.:..|:   .|.|.|...:...:|.|.:.|...::|..:...
 Worm   195 QAVWELFHTELVFLYRQLFVLRDVYKEPLKRCQVEGCLLLVEPDLLFGNLDQLCRISRTFCQSFL 259

  Fly  1653 DALD-MSLEQGDDDLLTVNIGRIFLDFTQMLHAFESYCVRQAGASLLLANLEKEKELLRIFLKVS 1716
            ..|. :..|..|...|.|::...|......:.|:::||:........|.::.:::|....|.::.
 Worm   260 SLLSTVDKENWDCTQLVVDLFERFSKGPSTISAYQAYCINYKATMEYLGSIRQKEERFTEFERIC 324

  Fly  1717 QMENAVLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQAQEKIELHLNHINQEA 1781
            ..:.... |:.|...|:.|:||:|:.|:||..::|        |...::::.|:|..::.:.:..
 Worm   325 LADERCF-RLQLEDLLIAPLQRITRLPILLREIHK--------RSEEEESKGKVEKVIDTMTESL 380

  Fly  1782 KDVPTK-----------------LWRRISSSSPNRRASCEIDMINIKL-RKMAIDVLEWNHDEVR 1828
            :.:...                 :|..||...|.   |...|.:.:.| |:...::|.  |...:
 Worm   381 RSIDDSVQWLHNFERLQQLQTQVVWPNISDLEPK---SYVPDFLRVALSRQFCENLLA--HPRRK 440

  Fly  1829 FAMEGRLLYTQPTDSNWKKARTIKLTPVNALLVTNGKPSANY-----------RAEKAMSEKLNF 1882
            ...||.|                       .||.||:....|           :.:|.       
 Worm   441 LIHEGPL-----------------------ELVENGRTVDMYAFLFNDMFVLTKTKKC------- 475

  Fly  1883 PKHTGIREASLLLVK----EKCGRYTLIREPLYLDRCVVCSEADWDD------------------ 1925
                    ||.|.||    .|...|.:.|:|:.||.||.| :||.:|                  
 Worm   476 --------ASKLKVKGVPIGKSEHYIVQRQPVPLDSCVFC-DADSNDQATPMSLKFAFVIIHLTR 531

  Fly  1926 YFEVQEISSKDTFIFKAEDGVRTKQWYTQLQ 1956
            |::|..|     :..:|.|....:.|..:.|
 Worm   532 YYQVVGI-----YTLQAADKADKELWIEKFQ 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF64CNP_001261425.1 RhoGEF 1593..1779 CDD:279015 42/241 (17%)
prhg-1NP_001122556.1 RhoGEF 196..385 CDD:279015 36/197 (18%)
PH_PLEKHG7 440..557 CDD:270065 32/160 (20%)
PH 441..561 CDD:278594 33/161 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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