DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGEF64C and tag-52

DIOPT Version :9

Sequence 1:NP_001261425.1 Gene:RhoGEF64C / 38578 FlyBaseID:FBgn0035574 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_508633.1 Gene:tag-52 / 180657 WormBaseID:WBGene00006431 Length:665 Species:Caenorhabditis elegans


Alignment Length:451 Identity:87/451 - (19%)
Similarity:166/451 - (36%) Gaps:129/451 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1570 DNGILYAPLVCRKCGKKRVERKEIITEIVETEEKYGRDLQIILEEFCHPMLVAGLLTQEQLSAIF 1634
            |...|||        .:..|:.:|:.||.:||..|.:.|.|:.|.|...:.:....:::...::|
 Worm    43 DMSTLYA--------NQPTEKIQILQEIYDTERTYVKALTIVDEIFIQQLNLWCPKSKKCFRSMF 99

  Fly  1635 LNTEDLLENNQTLAERMRDALDMSLEQGDDDLLTVNIGRIFLDFTQMLHAFESYCVRQAGASLLL 1699
            .....:.:.:|.|.|               .|....|..:|..|...|..:.||......:..:.
 Worm   100 GEISAICKTHQILLE---------------SLQCKPIAEVFTKFVPFLKLYTSYASHYPNSLKIF 149

  Fly  1700 ANLEKEKELLRIFLKVSQMENAVLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTPSHLEGRELLK 1764
            |.|....:..:...|:.  |:..:....|.::|::|:||:.:|.:|:..|               
 Worm   150 AKLMSRNDFRKALTKIE--EDPRVDGKKLQTYLIMPIQRIPRYIMLIQNL--------------- 197

  Fly  1765 QAQEKIELHLNHINQEAKDVPTKLWRRISSSS--PNRRASCEIDMINIKLRKMAIDVLEWNHDEV 1827
                     :|:..:  ||..|.|::.:|...  .::..||.....|.: |.:.|        ::
 Worm   198 ---------MNYSTE--KDDMTNLYKALSGMQGLSDQIQSCMTAYENGE-RLLQI--------QL 242

  Fly  1828 RFAMEGRLLYTQPTDSNWKKARTIKLTPVNALLVTNGKPSANYRAEKAMSEKLNFPKHTGIREAS 1892
            .|.::|.:|  :|.....|:....|..       .||  ||||  ::.:....|.....||:..|
 Worm   243 NFGLDGHIL--EPGRVLLKEGMLYKRE-------LNG--SANY--QETVVFLFNDILLYGIKRIS 294

  Fly  1893 LLLVKEKCGRYTLIREP---LYLDRCVVCSEADWDDYFEVQEISSKDTFIFKAEDGV-------- 1946
            ::.:   | :|    ||   |.|..|:|          ::.:|.. ..||...:.||        
 Worm   295 VMPL---C-KY----EPSAILSLRHCIV----------QLDDIGG-SIFIRCGDVGVDFTAYSLG 340

  Fly  1947 RTKQWYTQL-----------------QYHAQGM----GAWRKRRNALANIM---INGMLAR 1983
            ...:||.::                 .:..:.:    |.|::.|:.|.|::   :.|.::|
 Worm   341 GVTEWYNEICDAIDNAKKLRDTLRKESFKQKSLIFDKGFWQRNRDKLRNMITADMTGNISR 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF64CNP_001261425.1 RhoGEF 1593..1779 CDD:279015 34/185 (18%)
tag-52NP_508633.1 RhoGEF 58..224 CDD:279015 39/208 (19%)
PH-like 232..>318 CDD:302622 27/125 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5422
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.