DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGEF64C and rhgf-2

DIOPT Version :9

Sequence 1:NP_001261425.1 Gene:RhoGEF64C / 38578 FlyBaseID:FBgn0035574 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_001368191.1 Gene:rhgf-2 / 173748 WormBaseID:WBGene00006476 Length:1149 Species:Caenorhabditis elegans


Alignment Length:892 Identity:178/892 - (19%)
Similarity:313/892 - (35%) Gaps:248/892 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1124 GSATSSTPINTPPVISSTPATPPPTDLPIENANPLVPHETELLKILRNPVEAVKLNLVPHVCGLR 1188
            ||||.||         |.|.|...:: |:..........|.||.....|...|.|:.:       
 Worm     5 GSATPST---------SIPCTFTSSE-PLSAMRLCYNGATTLLAATACPAAFVDLDSI------- 52

  Fly  1189 APTRESGKSKKIQEEEVS----------GTPVKD-PGFIAKLLQDPMLGQVAEGLETETVAELIE 1242
               ||...|.:..:.:.|          |:|:.: |.........|.                  
 Worm    53 ---REEPPSPRPLDRDDSVFFRESCSTIGSPLDELPALPTSSTSSPF------------------ 96

  Fly  1243 NSLQRLQQARRGIDMSGTKDHDDMNRLISASLQRIRLERQPATPGISATKEEDRLSNRGSISSAN 1307
            ..::.:|:.|:    |..:.:...:.||:.  ::.|..|:|:.|.|..|.:|  :|:  |:..|.
 Worm    97 KFMESIQRKRK----SMFRRNQSSSNLINT--EKRRTTRRPSLPSIPPTIDE--MSS--SVGHAR 151

  Fly  1308 S-FASAHNYELFDFDGGAGGNESDCYQSCSSELTASGILEEDSVSPIKDPETELDAATRAKFYQL 1371
            | ..|.||                   ..::|......|:.                   :.:.:
 Worm   152 SRRPSLHN-------------------DWTNEHAQRNALDN-------------------RIHHI 178

  Fly  1372 LVDATLAEIEHSTHMDQTLGTDSEHHYESIRHSGDPIYEEIHEVPPPLPLSAPPLNDAE--LEKK 1434
            .:|.  .:|.:...:.:.|....:...|.||...:.:..|:.|  |.|.:....:||.|  |||.
 Worm   179 DIDP--PQINYFIAVFKDLDDREKDSVEHIRFDCNQLIYEVFE--PFLRIRGLTINDVEFFLEKS 239

  Fly  1435 -------------AARSIF-EGASKYDILSY------LVDAKER--------GLAREESFDYGNN 1471
                         |.:.|| .|.....::.:      :.::.||        .::|:.||   .|
 Worm   240 STPIPENSGARFLAGQRIFVRGRGNMKVVRHTRATHSMDESNERATRKMSAEAVSRKSSF---VN 301

  Fly  1472 PKIIEEEAADTLSDLDKRQAEERERD-----RDSGQSSMSSLSPPPHNFICGGAGKSSGSDVERQ 1531
            .:|:...:.:.........||.|..|     |||.|....|.|..|.:   ||..::......|.
 Worm   302 SRILNRGSRNHPGLNGSDDAECRSNDSSLSVRDSWQYDEPSCSEVPDD---GGTRRARSVTSSRI 363

  Fly  1532 DSGVGSETSKTSRSKYQATPTVLHLCEDCDGAVEMQVGDNGILYAPLVCRK-----------CGK 1585
            ....|.||.|..:..::              .:..:..|..:.|......|           ...
 Worm   364 SLFFGKETGKIEKEMFR--------------ILNQKKEDTDLEYPTYKLEKDWREIVHNHESLSD 414

  Fly  1586 KRVERKEIITEIVETEEKYGRDLQII--LEEFCHPMLVAGLLTQEQLSAIFLNTEDL-------- 1640
            |.::::|.|.|||.||.:|.:.|:.:  |..:...:...|.|...:...:|.|...|        
 Worm   415 KSIKQQEAIWEIVTTEFRYIKLLRYLSNLSFYLTDLQNCGFLKDIENRLVFFNFVTLFNVNYDSL 479

  Fly  1641 -LENNQTLAERMRDA---LDMS-LEQGDDDLLTVNIGRIFLDFTQMLHAFESYCVRQAGASLLLA 1700
             |::.:.:..:.|:.   ||:: |:.|..|:  .|..|.:.:|    |...|..::.....|   
 Worm   480 WLQSIEPILAKSRETGEPLDVNYLQNGFRDI--ENWSRCYTNF----HLAHSDSLKHIQKKL--- 535

  Fly  1701 NLEKEKELLRIFLKVSQMENAVLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQ 1765
               ||.|..|.|:..::.:..:.|:..:::| .||:||:|:|.|||..:.|||....| ||::..
 Worm   536 ---KESENFRDFVTWAEAQENLDRQKLIDTF-SVPMQRLTRYNLLLKAVLKVTTDENE-REMISN 595

  Fly  1766 AQEKIELHLNHINQEAKDVPTKLWRRISSSSPNRRASCEIDMINIKLRKMAIDVLEWNHDEVRFA 1830
            ..:..|.....:|:|                          :.|..||.|..||:.        .
 Worm   596 LVDCAESATAQLNKE--------------------------LNNNDLRAMLGDVMR--------T 626

  Fly  1831 MEGRLLYTQPTDSNWKKARTIKLTPVN----ALLVTNGKPSAN---YRAEKAMSEKLNFPK---H 1885
            :||.....|   ...::...:|| |:|    ..|:...||:..   ||.:..|.|.....|   |
 Worm   627 IEGPDYVDQ---DELERLFNLKL-PLNLGDFMPLLHPRKPTHRTLIYRGDLRMQEGKKGSKADVH 687

  Fly  1886 TGIREASLLL---VKEKCGRYTLIREPLYLDRCVVCSEADWDDYFEV 1929
            ..|.....|:   |:.|..|..:::.|:::.:.:....||.:.::.|
 Worm   688 CIIFTDMFLICRKVQGKKDRLKILKPPIHMGKMMFHYFADQNGFYLV 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF64CNP_001261425.1 RhoGEF 1593..1779 CDD:279015 50/200 (25%)
rhgf-2NP_001368191.1 RBD_PLEKHG5 186..262 CDD:340588 17/77 (22%)
RhoGEF 419..608 CDD:238091 51/202 (25%)
PH_PLEKHG5_G6 665..765 CDD:270064 15/70 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.