DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGEF64C and Arhgef18

DIOPT Version :9

Sequence 1:NP_001261425.1 Gene:RhoGEF64C / 38578 FlyBaseID:FBgn0035574 Length:1984 Species:Drosophila melanogaster
Sequence 2:XP_030099069.1 Gene:Arhgef18 / 102098 MGIID:2142567 Length:1434 Species:Mus musculus


Alignment Length:1156 Identity:229/1156 - (19%)
Similarity:390/1156 - (33%) Gaps:371/1156 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   922 KGLEPLPHEINKSPL----SPQRTVVRVAPFKPQ----------QQQVGGSGDGFTHEVHRLKIS 972
            :|.||.|:   ..||    :...|.....|.||:          :|:     |||...     :|
Mouse    30 RGSEPKPY---AQPLDSAAAASTTKGSCGPRKPENPDFFSTVEDEQE-----DGFLRH-----LS 81

  Fly   973 HSEED--ADLGVELRRRPNLFLSSPGEEDAAPKKTSILISGDDCYSTMNLSANAAQPLYQSSVVV 1035
            .|.||  .|:|.                          :.|.:....:.|  .|...|:||.|::
Mouse    82 ESTEDFSLDMGA--------------------------LQGSEYLRDLGL--GAPSDLHQSEVIM 118

  Fly  1036 NSHSATSVCISVSSAEEQEQELNQLNTLRSQQMGMGIAIIPIRGASEVNLQRSVSCISSTSSSST 1100
            :             .|...||..:.::..|.:   |.:.:|.|.:.|    ||.||..|....|.
Mouse   119 D-------------PETHRQEARRESSHTSCE---GASALPQRRSWE----RSRSCSGSCRRLSL 163

  Fly  1101 SSSSSSSGR--GRTLIRLDYDRERKGS---ATSSTPINTPPVISSTPATPPPTDLPIENANPLVP 1160
            .:|:...|.  .|||..|..:....|.   .....|::         .||.|:.           
Mouse   164 DASTVDKGACLPRTLASLALNLSGNGQKIWTQGCLPVS---------GTPAPSS----------- 208

  Fly  1161 HETELLKILRNPVEAVKLNLVPHVCGLRAPTRESGKSKKIQEEEVSGTPVKDPGFIAKLLQDPML 1225
                  |...:|.:.::...||..|       |....:...:.:|..:||:.       |:.|:|
Mouse   209 ------KECSSPEKRLRSKSVPVSC-------EISCMELASDSDVCTSPVQG-------LEPPVL 253

  Fly  1226 GQVAEGLETETVAE----LIENSLQRLQQARRGIDMSGTKDHDDMNRLISASLQRIRLERQPATP 1286
                |.||.:.|..    :::..||.|:|                   ...:.||.|:...|   
Mouse   254 ----ECLEKDHVEPEHVLIVQQVLQELRQ-------------------YHGARQRARMSTSP--- 292

  Fly  1287 GISATKEEDRLSNRGSISSANSFASAH-NYELFDF-----DGGA----GGNESDCYQSCSSELTA 1341
                                   ..|| |...|:|     ||..    .|..:...:|.||..:.
Mouse   293 -----------------------GGAHSNLTWFEFLSESEDGACKIEKPGKSTRVKRSLSSLRSR 334

  Fly  1342 SGILEEDSVSP--IKDPETELDAATR-AKFYQLLVDATLAEIEHSTHMDQTLGTDSEHHYESIRH 1403
            ....:|...||  :||...:|..... ...:||:                 .||.|       .|
Mouse   335 VTRQKEKGKSPAHLKDKTQDLPGKRECVNGHQLM-----------------RGTFS-------GH 375

  Fly  1404 SGDPIYEEIHEVPPPLPLSAPPLNDAELEKKAARSIFEGASKYDILSYLVDAKERGLAREESFDY 1468
            |..|:..|            |.||.|.|::....::....|.        .|..|.:....|...
Mouse   376 SSCPLCGE------------PLLNSASLKEHPRTTLLSDGSS--------PAPSRNVGMTISQKG 420

  Fly  1469 GNNPKIIEEEAADTLSDLDKRQAEERERDRDSGQSSMSSLSPPPHNFICGGAGKSSG---SDVER 1530
            |..|                                    :|.|     .|:|...|   .|::.
Mouse   421 GLQP------------------------------------TPSP-----AGSGVRLGPIAGDMDE 444

  Fly  1531 QDS----------GVGSETSKTSRSKYQATPTVLHL-CEDCDGAVEMQVGDNGILYAPLVCRKCG 1584
            .||          ...|.||..:.|.:...|.:..| ||....|.|.:.....:.......:|..
Mouse   445 ADSVFLKLKQTADDSLSLTSSNAESVFIEDPYIASLRCEIESDAHEFEAESWSLSVDLAYAKKQK 509

  Fly  1585 KKRVERKEIITEIVETEEKYGRDLQIILEEFCHPMLVAGLLTQEQLSAIFLNTEDLLENNQTLAE 1649
            |:.|:|::::.|:::||..:.|.|:|:|:.:...:......:.:.:|.:|...:|||:.:.....
Mouse   510 KEVVKRQDVLYELMQTEAHHVRTLKIMLKVYSRALQEELQFSGQAVSRLFPCADDLLDMHSHFLA 574

  Fly  1650 RMRDALDMSLEQGDD-DLLTVNIGRIFL-DFT-----QMLHAFESYCVRQAGA----SLLLANLE 1703
            |:::.....||:|.| :.:...||.:.: .|:     :|...:..:|.....|    .|||...:
Mouse   575 RLKERRQEFLEEGSDRNYVIQKIGDVLVQQFSGETGERMKEKYAVFCSGHNDAVGQYKLLLQQSK 639

  Fly  1704 KEKELLRIFLKVSQMENAVLRRMNLNSFLMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQAQE 1768
            |.:.|::   |:...  :::||:.:...:::..||:||||:|:.|:.:.|.:..|..:.|.||..
Mouse   640 KFQNLIK---KIGNF--SIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGTEDYKDLSQALS 699

  Fly  1769 KIELHLNHI---------NQEAKDVPTKLWRRISSSSPNRRASCEIDMINIKLRKMAID-VLEWN 1823
            .|:..::.:         :|..|::..|..::.|....|.....:.||  ::.|::.:: .|.|.
Mouse   700 LIKDIISQVDAKVSEYEKDQRLKEIAAKTDQKSSGKLKNGLTFRKEDM--LQQRQLHLEGALCWK 762

  Fly  1824 ------HDEVRFAMEGRLLYTQPTDSNWKKARTIKLTPVNALLVTNGKPSANYRAEKAM---SEK 1879
                  .|.:...:...||..|..|..:..|......||.:|.....:..||  .||||   |..
Mouse   763 STSGRLKDVLAVLLTDVLLLLQEKDQKYVFASVDSKPPVISLQKLIVREVAN--EEKAMFLISAS 825

  Fly  1880 LNFPKHTGIREASLLLVKEKCGRYTLIREP-----LYLDRCV-VCSEADWDDYFEVQE------- 1931
            :..|              |....||..:|.     .::.|.| .|.:.:.|.:.|.:|       
Mouse   826 MQGP--------------EMYEMYTSSKEDRNIWMAHIRRAVESCPDEEEDVFSEAEEKKIAEAR 876

  Fly  1932 ----------ISSKDTFIFKAEDGVRTKQWYTQ------LQYHAQGMGAWR 1966
                      :|.||..|  |:..:..:|.|.:      |:..||..|.:|
Mouse   877 TMKLQEFQERLSLKDQLI--AQSLLEKQQIYLEMAQLSGLEESAQNRGLFR 925

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF64CNP_001261425.1 RhoGEF 1593..1779 CDD:279015 45/205 (22%)
Arhgef18XP_030099069.1 RhoGEF 515..709 CDD:238091 46/198 (23%)
PH_ARHGEF18 750..868 CDD:275437 29/133 (22%)
DUF5401 <1080..>1197 CDD:375164
PRK13729 1153..>1305 CDD:184281
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5422
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.