DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF64C and arhgef26

DIOPT Version :9

Sequence 1:NP_001261425.1 Gene:RhoGEF64C / 38578 FlyBaseID:FBgn0035574 Length:1984 Species:Drosophila melanogaster
Sequence 2:XP_002933294.3 Gene:arhgef26 / 100495357 XenbaseID:XB-GENE-1011101 Length:868 Species:Xenopus tropicalis


Alignment Length:705 Identity:129/705 - (18%)
Similarity:248/705 - (35%) Gaps:185/705 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1171 NPVEAVKL--NLVPH-VCGLRAPTRESGKSKKIQEEE---VSGTPVKDPGFIAKLLQDPMLGQVA 1229
            |.|:.:.|  .:.|| |.||.:......:.:..|...   |:..||:|.....       |.|.|
 Frog    11 NDVKVIPLWRRMNPHQVEGLYSSLNPRPRPQSYQSPSGLLVTDFPVEDKHTFT-------LTQPA 68

  Fly  1230 EGLETETVAELIENSLQRLQQARRGIDMSGTKDHDDMNRLISASLQRIRLERQPATPGISATKEE 1294
            |.:.|..     :|         |.....||..:....|::.:| ..:.||.....|....:.:.
 Frog    69 ERITTSP-----DN---------RNSHQGGTSLYRPNGRILPSS-SSLSLEYNSVAPNQRHSPQV 118

  Fly  1295 DRLSNRGSIS-SANSFASAHNYELFDFDGGAGGNESDCYQSCSSELTASGILEEDSVSPIKDPET 1358
            .::.:..||| :||....:.|..|.                 .|..|::.|    :::|.|:   
 Frog   119 LKVVSSNSISFTANGALPSPNQRLM-----------------LSSRTSNNI----TLTPDKE--- 159

  Fly  1359 ELDAATRAKFYQLLVDATLAE-IEHSTHMDQTLGTDSEHHYESIRHSGDPIYEEIHEVPPPLPLS 1422
                       |::..::||. :.:|.:.:..:...::.. |:.....||:.             
 Frog   160 -----------QIVFGSSLANGMVNSNNNNNPMKPYNDQQ-ETNTLCSDPVL------------- 199

  Fly  1423 APPLNDAELEKKAARSIFEGASKYDILSYLVDAKE-------------RGLAREESFDYGNN--- 1471
            ..|.:|...::...|:....:|..:..|:::....             :|||........||   
 Frog   200 GSPKSDVNTKQVLQRTPSNSSSSTETQSFVLSTNSAAALKVGVQQIIPKGLASGVKLTNKNNSQN 264

  Fly  1472 ----------------------PKIIEEEAAD-----------------------TLSDLDKRQA 1491
                                  |.::.:|..|                       .:|.||....
 Frog   265 SQNMETGKRILKTRSMVETSSLPLVVVQEDGDIDADRDSPGTLRRGLRSTSYRRAVVSGLDFSNP 329

  Fly  1492 EERERDRDSGQSSMSSLSPPPHNFICGGAGKSSGSDVERQDSGVGSETSKTSRSKYQATPTVLHL 1556
            .||:::....|..:.::|.....|...|..|..   :.|.....|||.:......|:.....:..
 Frog   330 TERKKNNRMSQPILRTVSEDKEKFSSLGRIKRK---ILRGHGTFGSEENAVLYQNYKEKALDIDS 391

  Fly  1557 CEDCDGAVEMQVGDNGIL-YAPL--------VCRKCG------KKRVERKEIITEIVETEEKYGR 1606
            .||.|.  :.|..|..|: |.||        |.||.|      ::..:|:|.:.|::.:|..|..
 Frog   392 DEDADS--KEQKEDRIIVEYKPLRSTWSQLSVVRKNGLSQSVSQEERKRQEAMFEVISSEHSYLL 454

  Fly  1607 DLQIILEEFCHPMLVAGLLTQEQLSAIFLNTEDLLENNQTLAERMRDALDMSLEQGD-DDLLTVN 1670
            .|:|::..|.:...::..:|:.:...:|.|..|:.|.::...:.:......::...| .|::..:
 Frog   455 SLEILIRMFKNSKQLSATMTKTESHHLFSNITDVYEASKKFFKELEGRHQRNILIEDISDIVEKH 519

  Fly  1671 IGRIFLDFTQMLHAFESYCVRQAGASLLLANLEKEKELLRIFLKVSQMENAV--------LRRMN 1727
            ....|       ..:..||..:         :.:::.|.|:.|..|..:.|:        .|.:.
 Frog   520 AKATF-------DPYVKYCTNE---------VYQQRTLQRLILTNSSFKEALSKIESHEECRNLP 568

  Fly  1728 LNSFLMVPVQRVTKYPLLLARLYKVTPSHLEGRELLKQAQEKIELHLNHINQEAK 1782
            :.|||::|:||||:.|||:..:.:.||......|..|.|.:::...:...|:.|:
 Frog   569 MISFLILPMQRVTRLPLLMDTICQKTPKESAKYEASKHALKEVGKLVRLCNEGAR 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF64CNP_001261425.1 RhoGEF 1593..1779 CDD:279015 38/194 (20%)
arhgef26XP_002933294.3 RhoGEF 441..619 CDD:395496 38/193 (20%)
PH_ephexin 641..780 CDD:269929
SH3_ARHGEF16_26 790..844 CDD:212871
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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