DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12493 and Ilf3

DIOPT Version :10

Sequence 1:NP_647927.3 Gene:CG12493 / 38575 FlyBaseID:FBgn0035571 Length:296 Species:Drosophila melanogaster
Sequence 2:NP_001423363.1 Gene:Ilf3 / 84472 RGDID:619734 Length:915 Species:Rattus norvegicus


Alignment Length:260 Identity:72/260 - (27%)
Similarity:111/260 - (42%) Gaps:50/260 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 DGDSMSKIPDDAAMATSDPKKKKKKVKKLKRSQKAKDRLVRPLPKAVTSKDALMVLKELKGVIID 110
            ||:..|            |.|||||::  |:.:||:.      |:|:   :|||.|.:||    .
  Rat   395 DGEEKS------------PSKKKKKIQ--KKEEKAEP------PQAM---NALMRLNQLK----P 432

  Fly   111 NMQIK------QDHEGKNVANIVVNSKKYDAEGSSENSAGNAACEKALREI-LTTKMKALLAEPE 168
            .:|.|      ..|......::.|:...::|.|.|:.:|......|.|::: |.|.     ||..
  Rat   433 GLQYKLISQTGPVHAPIFTMSVEVDGSTFEASGPSKKTAKLHVAVKVLQDMGLPTG-----AEGR 492

  Fly   169 NSSGGDEDNILEKMTSYAVYKLAEKWNSDAIDVAALYNDVKNKKTSSSVGQLPKLWKN-MHPCMV 232
            :||.| ||:..|.....||.       :....|.|:.|......:.::..|.|.|.|: .:|.|.
  Rat   493 DSSKG-EDSAEESDGKPAVV-------APPPVVEAVSNPSSVFPSDATTEQGPILTKHGKNPVME 549

  Fly   233 LMQMRPQTTFKFLG-SSGENRKVFSMGVSVDNCEFKADGPTKKDARRKVAALVCNKLFGTDYPQA 296
            |.:.|....::.:. :.|.:.|.|.|.|.||..:|:..|..||.|:...|.....||| .|.|.|
  Rat   550 LNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLF-PDAPLA 613

  Fly   297  296
              Rat   614  613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12493NP_647927.3 DSRM_SF 95..155 CDD:444671 16/65 (25%)
DSRM_SF 227..284 CDD:444671 17/57 (30%)
Ilf3NP_001423363.1 DZF 106..360 CDD:128842
DSRM_ILF3_rpt1 416..488 CDD:380739 19/84 (23%)
DSRM_ILF3_rpt2 538..609 CDD:380741 22/71 (31%)
Blue background indicates that the domain is not in the aligned region.

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