DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12493 and tarbp2

DIOPT Version :10

Sequence 1:NP_647927.3 Gene:CG12493 / 38575 FlyBaseID:FBgn0035571 Length:296 Species:Drosophila melanogaster
Sequence 2:NP_956291.1 Gene:tarbp2 / 336141 ZFINID:ZDB-GENE-030131-8085 Length:346 Species:Danio rerio


Alignment Length:241 Identity:45/241 - (18%)
Similarity:80/241 - (33%) Gaps:78/241 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DCNMPDGESSLVITDGDSMSKIPDDAAMATSDPKKKKK----------------KVKKL-KRSQK 79
            :||.......||:..|   .::|:......|.|..:|:                ..||| ||:..
Zfish   137 ECNPVGALQELVVQKG---WRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKRNAA 198

  Fly    80 AKDRLVRPLPKAVTSKDALMVLKELKGVIIDNMQIKQDHEGK---NVANIVVNSK----KYDAEG 137
            ||                  :|..:..|.:|   ::..||.:   :..|:.:..:    |....|
Zfish   199 AK------------------MLSRIHDVPVD---MRSSHEAEAEDDTFNMQIGGRLEGGKSKGLG 242

  Fly   138 SSENSAGNAACEKALREILTTKMKALLAEPENSSGGDEDNILEKMTSYAVYKLAEKWNSDAIDVA 202
            .:.:|..|:|.||.|:         |...|...|...:.|....:.     :|:|:..     ..
Zfish   243 CTWDSLRNSAGEKILQ---------LRCHPLGQSDSIDSNFCSLLR-----ELSEEQR-----FG 288

  Fly   203 ALYNDVKNKKTSSSVGQLPKLWKNMHPCMVLMQMRPQTTFKFLGSS 248
            ..|.|::.:..|           .::.|:|.:..:|.|......||
Zfish   289 VSYLDIEERSLS-----------GLYQCLVELSTQPITVCHGFASS 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12493NP_647927.3 DSRM_SF 95..155 CDD:444671 14/66 (21%)
DSRM_SF 227..284 CDD:444671 6/22 (27%)
tarbp2NP_956291.1 DSRM_SF 27..96 CDD:444671
DSRM_TARBP2_rpt2 139..205 CDD:380681 16/86 (19%)
DSRM_TARBP2_rpt3 272..343 CDD:380722 12/73 (16%)
Blue background indicates that the domain is not in the aligned region.

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