DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12493 and Stau2

DIOPT Version :10

Sequence 1:NP_647927.3 Gene:CG12493 / 38575 FlyBaseID:FBgn0035571 Length:296 Species:Drosophila melanogaster
Sequence 2:NP_079579.2 Gene:Stau2 / 29819 MGIID:1352508 Length:570 Species:Mus musculus


Alignment Length:337 Identity:64/337 - (18%)
Similarity:103/337 - (30%) Gaps:123/337 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 TDGDSMSK----IPDDAAMATSDPKKKKKKVKK-------------------LKRSQKAKDRLVR 86
            ::|.|:.|    :.:.|...::.||..:|..|.                   :||.:.|   :.|
Mouse    53 SEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPA---IYR 114

  Fly    87 PL-PKAVTSKDALMVLKELKGVIIDNMQIKQDHEGKN------------VANIVVNSKKYDAEGS 138
            || ||.                 ..|.:...:..|..            ...:.|.:.::..||.
Mouse   115 PLDPKP-----------------FPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGK 162

  Fly   139 SENSAGNAACEKALREILTTKMKALLAEPENSSGG---DEDNILEKMTSYAVYKLAEKWNSDAID 200
            :..:|.:.|..|||:.:....:..  ..|:|...|   |:|....|.....|:::|.|.|. .:.
Mouse   163 TRQAARHNAAMKALQALQNEPIPE--KSPQNGESGKEMDDDKDANKSEISLVFEIALKRNM-PVS 224

  Fly   201 VAALYND----VKNKKTSSSVGQL--------PKLWKNMHPCMVLMQM----------------- 236
            ...:...    :|:..|..|||:.        .||.|......||.::                 
Mouse   225 FEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFK 289

  Fly   237 -RPQTTFK------------------------------FLGSSG-ENRKVFSMGVSVDNCEFKAD 269
             ||:|..|                              .|...| ..|:.|.|.|.|.|......
Mouse   290 KRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGT 354

  Fly   270 GPTKKDARRKVA 281
            ||.||.|::..|
Mouse   355 GPNKKIAKKNAA 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12493NP_647927.3 DSRM_SF 95..155 CDD:444671 10/71 (14%)
DSRM_SF 227..284 CDD:444671 20/104 (19%)
Stau2NP_079579.2 DSRM_SF 3..70 CDD:444671 3/16 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..94 4/22 (18%)
DSRM_STAU2_rpt2 98..179 CDD:380711 18/100 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..203 5/26 (19%)
DSRM_STAU2_rpt3 206..272 CDD:380713 15/66 (23%)
Nuclear localization signal 1 273..291 0/17 (0%)
DSRM_STAU2_rpt4 304..389 CDD:380715 14/63 (22%)
Nuclear localization signal 2. /evidence=ECO:0000250 373..412
Required for dendritic transport. /evidence=ECO:0000250 381..570
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..413
Staufen_C 465..523 CDD:465131
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 545..570
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.