DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18418 and PMP34

DIOPT Version :10

Sequence 1:NP_647924.2 Gene:CG18418 / 38572 FlyBaseID:FBgn0035568 Length:311 Species:Drosophila melanogaster
Sequence 2:NP_728982.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster


Alignment Length:314 Identity:67/314 - (21%)
Similarity:131/314 - (41%) Gaps:64/314 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 VMGGTSGMLATCIVQPLDLLKTRMQISGTLGTREYKNSFEVLSKVLKNEGILSLYNGLSAGLLRQ 83
            |.|...|.:|.....|||.:::|:|:.   ...:.:::.:|:.:::..||..|||.||  |.:.|
  Fly    20 VSGAAGGCIAMSTFYPLDTVRSRLQLE---EAGDVRSTRQVIKEIVLGEGFQSLYRGL--GPVLQ 79

  Fly    84 ATYTSAKMGVYQMELDWYRKNF--------------GNYPSM---VASMTMGIVAGAFGAMCGNP 131
            :...|               ||              |..||.   :..:.:|.:||....:...|
  Fly    80 SLCIS---------------NFVYFYTFHALK
AVASGGSPSQHSALKDLLLGSIAGIINVLTTTP 129

  Fly   132 AEVALIRMMSDNRLMPED--RRNYKNVGDAFVRIVKDEGVVALWRGCLPTVGRAMVVN--MVQLA 192
            ..|...|:...|.....|  .::|||:.:....:.:.||:..||.|.:|::   |:|:  .:|..
  Fly   130 FWVVNTRLRMRNVAGTSDEVNKHYKNLLEGLKYVAEKEGIAGLWSGTIPSL---MLVSNPALQFM 191

  Fly   193 SYSLMKNQLHGYLS---EGIPLHLTAALVSGLLTSVTSMPLDMAKTRIQ-QMKVIDGKPEYS--- 250
            .|.::|..:..:..   ..:......|:.....| |.:.||.:.:|:.: :.|..|.||..|   
  Fly   192 MYEMLKRNIMR
FTGGEMGSLSFFFIGAIAKAFAT-VLTYPLQLVQTKQRHRSKESDSKPSTSAGS 255

  Fly   251 -----GTIDVLKKVLKNEGAFAVWKGFTPYLMRMGPHTIFSFVFLEQMNKAYSK 299
                 .|::::..:|:::|...:::|....:::    |:.:...   |..||.|
  Fly   256 TPRTESTLELMISILQHQGIRGLFRGLEAKILQ----TVLTAAL---MFMAYEK 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18418NP_647924.2 Mito_carr 10..108 CDD:395101 23/102 (23%)
Mito_carr 109..205 CDD:395101 24/102 (24%)
Mito_carr 208..300 CDD:395101 20/101 (20%)
PMP34NP_728982.1 Mito_carr 15..96 CDD:395101 22/95 (23%)
Mito_carr 105..202 CDD:395101 23/99 (23%)
Mito_carr 214..303 CDD:395101 20/97 (21%)

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