DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC1 and HDA6

DIOPT Version :10

Sequence 1:NP_647918.2 Gene:HDAC1 / 38565 FlyBaseID:FBgn0015805 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_201116.1 Gene:HDA6 / 836431 AraportID:AT5G63110 Length:471 Species:Arabidopsis thaliana


Alignment Length:459 Identity:274/459 - (59%)
Similarity:351/459 - (76%) Gaps:14/459 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDEY 70
            |:||.|:|:..||:||||||||||||||||.|:|:::|.|:|::||.||..|.|.::.:|||.||
plant    18 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEY 82

  Fly    71 VRFLRSIRPDNMSEYN--KQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINW 133
            |.||.|:.|::|.:.:  :.::||||||||||||||::||:.|||||:.||||||:|.::|.|||
plant    83 VDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINW 147

  Fly   134 GGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHK 198
            ||||||||||||||||||||||||||||||..:||||||||||||||||||||||||||||||||
plant   148 GGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHK 212

  Fly   199 YGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETFQPAAVVLQCGADS 263
            :|::|||||.:||:||.||||||:|:||.|||||:::.|:|.|:|.||||.:||.||||||||||
plant   213 FGDFFPGTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADS 277

  Fly   264 LTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIANELPY 328
            |:|||||||||:||||..|:.|::.||:|.:::||||||||||:|||.|||:||:.||..|:|||
plant   278 LSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPY 342

  Fly   329 NDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPE-DAINDESD 392
            |:||||||||:.||:.||.|.|.||.:.:|:|:|.|.|.|..|.|||.||.|..|. :.:.||.:
plant   343 NEYFEYFGPDYTLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPE 407

  Fly   393 DEDKVDKDDRL------PQSDKDKRIVPENEYSDSEDEGEGGRRDNRSYKGQRKRPRLDKDTNSN 451
            |:.:.....|:      .:||.|....|.:.||     ..||...:|...|:.:....:.:.:.|
plant   408 DDMETRPKPRIWSGTATYESDSDDDDKPLHGYS-----CRGGATTDRDSTGEDEMDDDNPEPDVN 467

  Fly   452 KASS 455
            ..||
plant   468 PPSS 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC1NP_647918.2 Arginase_HDAC 5..372 CDD:450134 249/367 (68%)
HDA6NP_201116.1 HDAC_classI 24..331 CDD:212517 214/306 (70%)

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