DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC1 and hdac5

DIOPT Version :10

Sequence 1:NP_647918.2 Gene:HDAC1 / 38565 FlyBaseID:FBgn0015805 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_685659.5 Gene:hdac5 / 557486 ZFINID:ZDB-GENE-121219-3 Length:1128 Species:Danio rerio


Alignment Length:442 Identity:116/442 - (26%)
Similarity:186/442 - (42%) Gaps:79/442 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 HPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQ 90
            ||....||:...:.|...||..:.|..|..|||.||:...|| ||...|....|.|..:.:.:..
Zfish   713 HPEHAGRIQSVWSRLQETGLLGRCERIRGRKATLDEIQTVHS-EYHTLLYGTSPLNRQKLDSKKL 776

  Fly    91 RFNVGEDCPVFDGLYEF--C------------QLSAGGSVAAAVKLNKQASEICINWGGGL---- 137
               :|   |:...:|..  |            ::.:.|:|..||..   ..|:......|.    
Zfish   777 ---LG---PISQKMYAVLPCGGIGVDSDTVWNEMHSSGAVRMAVGC---VIELAFKVAAGELKNG 832

  Fly   138 --------HHAKKSEASGFCYVNDIVLGILELLKYH---QRVLYIDIDVHHGDGVEEAFYTTDRV 191
                    |||::|.|.|||:.|.:.: ..:||:..   .::|.||.|:|||:|.::|||....|
Zfish   833 FAVVRPPGHHAEESTAMGFCFFNSVAI-TAKLLQQKLGVGKILIIDWDIHHGNGTQQAFYNDPNV 896

  Fly   192 MTVSFHKY--GEYFPGTGDLRDIGAGKGKYYAVNIPLRDG----MDDDAYESIFVPIISKVMETF 250
            :.:|.|:|  |.:|||:|...::|.|.|:.:.|||....|    |.|..|.:.|..::..:...|
Zfish   897 LYISLHRYDDGNFFPGSGAPEEVGVGPGEGFNVNIAWTGGVEPPMGDVEYLTAFRTVVMPIANEF 961

  Fly   251 QPAAVVLQCGADSLTGDR--LGCFNLTVKGHGKCVEFVKKYNLPFLMVGG-------GGYTIRNV 306
            .|..|::..|.|::.|.:  ||.:|:|.|..|...:.:.|      :.||       ||:.:..:
Zfish   962 SPDVVLVSAGFDAVEGHQSPLGGYNVTAKCFGHLTKQLMK------LAGGRVVLALEGGHDLTAI 1020

  Fly   307 SRCWTYETSV-ALAVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNRLFENLRM 370
              |...|:.| ||..:..|.||..          .|...|......:....:| |:::.:.:|:.
Zfish  1021 --CDASESCVEALLGDELNPLPLT----------VLQQKPCPKATASLERVIE-IQSKHWTSLQR 1072

  Fly   371 LPHAPGVQIQAIPEDAINDESDDEDKVDKDDRLPQSDKDKRIVPENEYSDSE 422
            |  ||.|....:  ||...|.|:.|.:.....|...::.:....|...|..|
Zfish  1073 L--APTVGQSLL--DAQRREKDEADTLTAMASLTVDNEQQTTSTETSRSAEE 1120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC1NP_647918.2 Arginase_HDAC 5..372 CDD:450134 103/390 (26%)
hdac5XP_685659.5 ClassIIa_HDAC5_Gln-rich-N 94..181 CDD:197400
HDAC5 688..1107 CDD:212531 113/427 (26%)
Blue background indicates that the domain is not in the aligned region.

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