DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HDAC1 and hdac11

DIOPT Version :9

Sequence 1:NP_647918.2 Gene:HDAC1 / 38565 FlyBaseID:FBgn0015805 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_021335266.1 Gene:hdac11 / 431718 ZFINID:ZDB-GENE-040704-7 Length:375 Species:Danio rerio


Alignment Length:210 Identity:60/210 - (28%)
Similarity:85/210 - (40%) Gaps:45/210 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 GGSVAAAVKLNKQASE--ICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRV---LYID 172
            ||::.|    .|.|.:  ..||.|||.||....:..|||...||.|.|..|.:..:.|   ..||
Zfish   139 GGTIMA----GKLAIDRGWAINVGGGFHHCSSDKGGGFCAYADITLAIKFLFERVEGVASATIID 199

  Fly   173 IDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAV-----NIPLRDGMDD 232
            :|.|.|:|.|..|....||..:..:. ...:||.|            ||.     .:.|..|.:|
Zfish   200 LDAHQGNGHERDFLEDRRVYIMDVYN-RHIYPGDG------------YAKRAIKRKVELDWGTED 251

  Fly   233 DAYESIFVPIISKV-------METFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFV---- 286
            ..|       :.||       :...:|..::...|.|.|.||.||...::.:|..|..|.:    
Zfish   252 SEY-------LQKVDLHSEGALNEARPDIIIYNAGTDILDGDPLGGLAISPQGIIKRDEIIFRAA 309

  Fly   287 KKYNLPFLMVGGGGY 301
            ::..:|.|||..|||
Zfish   310 RRRGIPILMVTSGGY 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC1NP_647918.2 Arginase_HDAC 5..372 CDD:388375 60/210 (29%)
hdac11XP_021335266.1 HDAC_classIV 46..339 CDD:212519 60/210 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.