DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC1 and hda-1

DIOPT Version :10

Sequence 1:NP_647918.2 Gene:HDAC1 / 38565 FlyBaseID:FBgn0015805 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_506599.1 Gene:hda-1 / 179959 WormBaseID:WBGene00001834 Length:461 Species:Caenorhabditis elegans


Alignment Length:459 Identity:295/459 - (64%)
Similarity:363/459 - (79%) Gaps:7/459 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQSHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKF 65
            :..|.|:||.|||||:||||||||||.||||||||||:|:|||||||.:||:||..|:.::||:|
 Worm     7 LMEHGKRRVAYYYDSNIGNYYYGQGHVMKPHRIRMTHHLVLNYGLYRNLEIFRPFPASFEDMTRF 71

  Fly    66 HSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEIC 130
            |||||:.||:|..|||:..:||||.:||||||||:|||||||||||:|||:|||.|||||..:|.
 Worm    72 HSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIA 136

  Fly   131 INWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVS 195
            |||.||||||||||||||||.||||||||||||||:||||:||||||||||||||||||||||||
 Worm   137 INWMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVS 201

  Fly   196 FHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETFQPAAVVLQCG 260
            |||||::|||||||:||||||||.|:||:|||||:.|.:|:|||.||::||||.|.|.|||||||
 Worm   202 FHKYGDFFPGTGDLKDIGAGKGKLYSVNVPLRDGITDVSYQSIFKPIMTKVMERFDPCAVVLQCG 266

  Fly   261 ADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIANE 325
            ||||.|||||.||||:||||:|..|.:.||:|.:||||||||.|||:||||||||:|:..|:.||
 Worm   267 ADSLNGDRLGPFNLTLKGHGECARFFRSYNVPLMMVGGGGYTPRNVARCWTYETSIAVDKEVPNE 331

  Fly   326 LPYNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPED---AI 387
            ||||||||||||:::|||..||..|:|:|:.|.|::..:..||..|...|.||::.||||   |:
 Worm   332 LPYNDYFEYFGPNYRLHIESSNAANENSSDMLAKLQTDVIANLEQLTFVPSVQMRPIPEDALSAL 396

  Fly   388 NDESDDEDKVDKDDRLPQSDKDKRIVPENEYSDSEDEGEGGRRDNRSYKGQRKRPRLDKDTNSNK 452
            ||:|...|:.:.|.|||....|..|..:.::.|.|.||:    |.|:....::..:.:.:....:
 Worm   397 NDDSLIADQANPDKRLPPQITDGMIQDDGDFYDGEREGD----DRRNESDAKRAAQFESEGGEKR 457

  Fly   453 ASSE 456
            ..:|
 Worm   458 QKTE 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC1NP_647918.2 Arginase_HDAC 5..372 CDD:450134 268/366 (73%)
hda-1NP_506599.1 HDAC_classI 18..323 CDD:212517 236/304 (78%)

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