DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC1 and HDAC3

DIOPT Version :10

Sequence 1:NP_647918.2 Gene:HDAC1 / 38565 FlyBaseID:FBgn0015805 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_322018.5 Gene:HDAC3 / 1282023 VectorBaseID:AGAMI1_000192 Length:433 Species:Anopheles gambiae


Alignment Length:424 Identity:256/424 - (60%)
Similarity:335/424 - (79%) Gaps:4/424 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDEYV 71
            |:|.|:::.|:||::||.||||||||:.:.|:|::||||::||:||||:||:|.:|.:||||||:
Mosquito     4 KKVSYFFNPDVGNFHYGPGHPMKPHRLSVIHHLVMNYGLHKKMQIYRPYKASAHDMCRFHSDEYI 68

  Fly    72 RFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGG 136
            .||:.:.|.|:..|.|.:..||||:||||||||:|||.:..|.|:..|.|||...|:|||||.||
Mosquito    69 EFLQRVTPQNIQGYTKCLSVFNVGDDCPVFDGLFEFCAMYTGASLEGAQKLNHNHSDICINWSGG 133

  Fly   137 LHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGE 201
            ||||||.||||||||||||:|||||||||.|||||||||||||||:||||.|||||||||||||.
Mosquito   134 LHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKYGN 198

  Fly   202 Y-FPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETFQPAAVVLQCGADSLT 265
            | ||||||:.:|||..|:||:||:||::|:||.:|..:|.|:||.|||.:||.|:|||||||||.
Mosquito   199 YFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYVQVFKPVISAVMEFYQPTAIVLQCGADSLA 263

  Fly   266 GDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIANELPYND 330
            |||||||:|:.||||:||:|||..|:|.|:|||||||:|||:||||||||:.:...|:||||.||
Mosquito   264 GDRLGCFSLSTKGHGECVKFVKDLNVPTLVVGGGGYTLRNVARCWTYETSLLIDETISNELPMND 328

  Fly   331 YFEYFGPDFKLHIS-PSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPEDAINDE--SD 392
            |.|:|.|||.||.. ||...|.|:.:|||.|...:::||:|..|||.||:..|||||:.:|  :.
Mosquito   329 YLEFFAPDFTLHPDIPSRQDNANSKQYLEAITRHVYDNLKMCQHAPSVQMFDIPEDALPEELKTV 393

  Fly   393 DEDKVDKDDRLPQSDKDKRIVPENEYSDSEDEGE 426
            ..::.:.|.|:.|.|:|:.:.|:||:.|.:::.:
Mosquito   394 KTEEPNPDVRMTQDDEDRLVEPKNEFFDGDNDND 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC1NP_647918.2 Arginase_HDAC 5..372 CDD:450134 236/366 (64%)
HDAC3XP_322018.5 HDAC3 4..384 CDD:212529 243/379 (64%)

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