DRSC/TRiP Functional Genomics Resources

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Protein Alignment HDAC1 and HDAC4

DIOPT Version :10

Sequence 1:NP_647918.2 Gene:HDAC1 / 38565 FlyBaseID:FBgn0015805 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_061497881.1 Gene:HDAC4 / 1271834 VectorBaseID:AGAMI1_002562 Length:1199 Species:Anopheles gambiae


Alignment Length:222 Identity:41/222 - (18%)
Similarity:77/222 - (34%) Gaps:73/222 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 HYVTVSNSLVTLYGKCGDIDDSTRLFNEMN--VRDAVSWTA--------MVSAYAQFGRAVETIQ 432
            |..|.::.|.:|.....|:.......:|:.  .:|..::||        .:.|...:|    |.:
Mosquito     9 HVATTNSRLASLRANLIDVSTFPEACSELTKWCQDQRAFTAHFEDNLMMALEAAMDYG----TRE 69

  Fly   433 LFDKMVQHGLKPDGVTLTGVISAC-------SRAGLVEKGQRY---------------------- 468
            .:|.|:.|||          :.||       |:......|:.|                      
Mosquito    70 NYDYMLTHGL----------VGACFTHRKHLSKPAATRIGRWYEQMRRLKKNGGKRKRAPPKPKD 124

  Fly   469 --FKLMTSEYGIVPSIGHYSCMIDLFSRSGRL--EEAMRFI------NGMPFPPDAIGWTTLLSA 523
              .:..:...|.:|.:...||     .::|:.  .|...|:      :|..:||..:..:|..|:
Mosquito   125 PALQASSQPTGTLPVLTSPSC-----PQNGQQLPTENNNFMFSPNSSDGSMWPPQGVPMSTPGSS 184

  Fly   524 CRNKGNLEIGKWAAESLIELD--PHHP 548
            .   |::.:|..||....:::  |.||
Mosquito   185 A---GHMPLGAGAASFPGQMNGPPQHP 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HDAC1NP_647918.2 Arginase_HDAC 5..372 CDD:450134
HDAC4XP_061497881.1 None
Blue background indicates that the domain is not in the aligned region.

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