DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42540 and stoml1

DIOPT Version :10

Sequence 1:NP_001246627.1 Gene:CG42540 / 38562 FlyBaseID:FBgn0260657 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001039193.1 Gene:stoml1 / 734047 XenbaseID:XB-GENE-990189 Length:361 Species:Xenopus tropicalis


Alignment Length:165 Identity:60/165 - (36%)
Similarity:103/165 - (62%) Gaps:2/165 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 CGKLLIFLSVALVIMTLPFSLFVCFKVVQEYERAVIFRLGRLMQGGAKGPGIFFILPCIDSYARV 250
            |...:..||:..:|:|.|.|.:...|:|.:|:|.|||||||:.  .|:|||:..:.|.||.:.||
 Frog    36 CHTAISCLSLLFLIVTFPLSAWCFLKMVPDYQRIVIFRLGRVQ--AARGPGLVLLFPLIDQFQRV 98

  Fly   251 DLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMGTRH 315
            |:||:.:.|||.:|.::|.|.||:.|.:.:.:.:..:|:.:|::.:..||..||..:..::|.::
 Frog    99 DMRTKAFSVPPSKVKSRDGVLVSMGADIQFCICDPVLSVLSVQDLNFVTRNTAQNLMTQSLGRKY 163

  Fly   316 LHEILSERMTISGTMQVQLDEATDAWGIKVERVEI 350
            |.||.::|..|:..::..|:|....||:.|||||:
 Frog   164 LREIQNDRARIAEHLKEDLNEQVKPWGLCVERVEL 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42540NP_001246627.1 SPFH_stomatin 229..430 CDD:259801 42/122 (34%)
stoml1NP_001039193.1 SPFH_SLP-1 75..205 CDD:259814 44/126 (35%)
SCP2 254..359 CDD:442486
Blue background indicates that the domain is not in the aligned region.

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