DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42540 and stoml3a

DIOPT Version :9

Sequence 1:NP_001246627.1 Gene:CG42540 / 38562 FlyBaseID:FBgn0260657 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001092220.1 Gene:stoml3a / 571219 ZFINID:ZDB-GENE-070620-18 Length:284 Species:Danio rerio


Alignment Length:260 Identity:171/260 - (65%)
Similarity:217/260 - (83%) Gaps:6/260 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 GKLLIFLSVALVIMTLPFSLFVCFKVVQEYERAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVD 251
            |.|:|.:::.:.|..||.::|:|.|:||||||||||||||::....|||||||:|||.||:.:||
Zfish    31 GWLIIIIAIIITIGLLPITIFMCIKIVQEYERAVIFRLGRILDKKPKGPGIFFVLPCTDSFMKVD 95

  Fly   252 LRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMGTRHL 316
            |||.|:::|.||.||||||||:||.|||:||.:...|:|||.||:.:|:|||||||||.:||::|
Zfish    96 LRTVTFNIPAQEFLTKDSVTVNVDGVVYFRVFDPICSVANVSNANQATQLLAQTTLRNVLGTKNL 160

  Fly   317 HEILSERMTISGTMQVQLDEATDAWGIKVERVEIKDVRLPVQLQRAMAAEAEAAREARAKVIAAE 381
            .|:||:|..||.:||:.|||||..|||||||||||||:||:||||||||||||:|||||||||||
Zfish   161 SELLSDREGISNSMQIALDEATGVWGIKVERVEIKDVKLPIQLQRAMAAEAEASREARAKVIAAE 225

  Fly   382 GEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEKNSTIVFPLPIDLITYFLKTNEATTQQN 446
            ||..|||||:|||.||.:||:||||||||||:||:||:||||:||||||:|.:|      |:::|
Zfish   226 GEMNASRALKEASLVIAESPSALQLRYLQTLSTIAAERNSTIIFPLPIDIIHHF------TSKRN 284

  Fly   447  446
            Zfish   285  284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42540NP_001246627.1 HflC 188..440 CDD:223407 168/251 (67%)
SPFH_stomatin 229..430 CDD:259801 142/200 (71%)
stoml3aNP_001092220.1 PHB 52..204 CDD:214581 100/151 (66%)
SPFH_like 77..274 CDD:302763 142/196 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596740
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0330
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062075at2759
OrthoFinder 1 1.000 - - FOG0000760
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10264
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
76.810

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