DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42540 and phb

DIOPT Version :9

Sequence 1:NP_001246627.1 Gene:CG42540 / 38562 FlyBaseID:FBgn0260657 Length:517 Species:Drosophila melanogaster
Sequence 2:XP_005163854.1 Gene:phb / 321346 ZFINID:ZDB-GENE-030131-6577 Length:309 Species:Danio rerio


Alignment Length:252 Identity:60/252 - (23%)
Similarity:109/252 - (43%) Gaps:41/252 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 RAVIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLT--KDSVTVSVDAVVYY 280
            |||||...|.:|....|.|..|::|.:......|.|:|..:||   |:|  ||...|::...:.:
Zfish    72 RAVIFDRFRGVQDVVVGEGTHFLIPWVQKPIIFDCRSRPRNVP---VITGSKDLQNVNITLRILF 133

  Fly   281 R-VSNATVSIANVENAHHSTRLLAQTT---LRNTMGTRHLHEILSERMTISGTMQVQLDEATDAW 341
            | |:.....|.......:..|:|...|   |::.:......|::::|..:|..:...|.|....:
Zfish   134 RPVAGQLPRIFTSIGEDYDERVLPSITTEVLKSVVARFDAGELITQRELVSRQVSEDLTERASTF 198

  Fly   342 GIKVERVEI------KDVRLPVQLQRAMAAEAEAAR--------EARAKVIAAEGEQKASRALRE 392
            |:.::.|.:      |:....|::::....|||.||        :.:|.:|:|||:.:|:..:..
Zfish   199 GLILDDVSLTHLTFGKEFTEAVEMKQVAQQEAERARFVVEKAEQQKQAAIISAEGDSQAALLIAN 263

  Fly   393 ASEVIGDSPAALQLRYLQTLNTI----SAEKNSTIVFPLPIDLITYFLKTNEATTQQ 445
            :....||  ..::||.|:....|    |..:|.|            :|.:.:.|..|
Zfish   264 SLAEAGD--GLVELRKLEAAEDIAFQLSRARNVT------------YLPSGQGTLLQ 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42540NP_001246627.1 HflC 188..440 CDD:223407 58/245 (24%)
SPFH_stomatin 229..430 CDD:259801 51/224 (23%)
phbXP_005163854.1 PHB 63..224 CDD:214581 37/154 (24%)
SPFH_prohibitin 64..258 CDD:259799 47/188 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0330
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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