DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42540 and Phb2

DIOPT Version :10

Sequence 1:NP_001246627.1 Gene:CG42540 / 38562 FlyBaseID:FBgn0260657 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001013053.1 Gene:Phb2 / 114766 RGDID:620203 Length:299 Species:Rattus norvegicus


Alignment Length:258 Identity:55/258 - (21%)
Similarity:109/258 - (42%) Gaps:49/258 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 LLIFLSVALVIMTLPFSLFVCFKVVQEYERAVIF-RLGRLMQGGAKGPGIFFILPCIDSYARVDL 252
            |.:.|....|...:..|:|    .|:...||:.| |:|.:.|......|:.|.:|........|:
  Rat    23 LKLLLGAGAVAYGVRESVF----TVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDI 83

  Fly   253 RTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATVSIANVENAH------------HSTRLL--- 302
            |.|     |:::   .|.|.|.|    .::.|.::.:.:..||.            :..|:|   
  Rat    84 RAR-----PRKI---SSPTGSKD----LQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSI 136

  Fly   303 AQTTLRNTMGTRHLHEILSERMTISGTMQVQLDEATDAWGIKVERVEIKDVRL------------ 355
            ....|::.:...:..:::::|..:|..::.:|.|....:.:.::.|.|.::..            
  Rat   137 VNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQ 201

  Fly   356 --PVQLQRAMAAEAEAAREARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQTLNTIS 416
              ..:.|||.....:|.:|.|.|::.||||.:|::.|.||   :..:|..::||.::....||
  Rat   202 VAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEA---LSKNPGYIKLRKIRAAQNIS 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42540NP_001246627.1 SPFH_stomatin 229..430 CDD:259801 44/217 (20%)
Phb2NP_001013053.1 Necessary for transcriptional repression. /evidence=ECO:0000250|UniProtKB:Q99623 19..49 6/29 (21%)
SPFH_prohibitin 40..235 CDD:259799 42/210 (20%)
Necessary for transcriptional repression. /evidence=ECO:0000250|UniProtKB:Q99623 150..174 4/23 (17%)

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