DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tie and ret

DIOPT Version :10

Sequence 1:NP_523928.1 Gene:Tie / 38559 FlyBaseID:FBgn0014073 Length:1233 Species:Drosophila melanogaster
Sequence 2:NP_858048.2 Gene:ret / 30512 ZFINID:ZDB-GENE-980526-307 Length:1106 Species:Danio rerio


Alignment Length:1158 Identity:248/1158 - (21%)
Similarity:400/1158 - (34%) Gaps:376/1158 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 TALHRGGFRTRIGTTGRTAIS------------PSAAVEST---SKAPS----DPRSVCIRNCTK 233
            ::|..|..|:....|.:..:|            |:..|:.:   ..|||    :..::|......
Zfish    94 SSLRSGSVRSPKDLTLKVGVSSTPPMKVMCTILPTVEVKLSFINDTAPSCGQVELSTLCFPEKIS 158

  Fly   234 N--FTRRTTASCMRQCANFTRMAMPSNGNSSVVLKGSASLKAAAPAGDRDTNEILFSDESSHGLF 296
            |  .|.......:||...||.|::..|...|..:...:|:..|.             |:|:..|.
Zfish   159 NPHITENREPGALRQLRRFTHMSICPNYTISYGVVAGSSVPFAV-------------DDSTSELV 210

  Fly   297 VVAKEQNGTLNHIADGTKPAVMGKGIPSKTNSMEDDVEE----------EEDELKPYVYFGAKLP 351
            |.|:         .|..:..|....|.....: |.::||          :||:..|||       
Zfish   211 VTAQ---------VDREEKEVYHLDIVCMVRT-ERNLEEVFRSLHVNIYDEDDNSPYV------- 258

  Fly   352 PIRPGGLTIKAAEGDDDHPRVLEVSVAQST---TPTITTTSTTPAPVSSTRPTASTRRPLTPVER 413
                        .|.|....::|...::.|   |..:....|||     ..||...:..|.....
Zfish   259 ------------NGTDTEDVLVEFDRSEGTVFGTLFVYDRDTTP-----VYPTNQVQNKLVGTLM 306

  Fly   414 SRSKY-------KYHMRERGLVPTAAPPPAAPPAPPVSRTRYVGSGRPTAGLSDSIQDLKQTESE 471
            :...:       ::..||...:                    .|:.|.|      :.:.|     
Zfish   307 TNDSWIKNNFAIEHKFREEKAI--------------------FGNVRGT------VHEYK----- 340

  Fly   472 VAKPVVRRVVQKVSPSSSTPLIITVLSAEEETTVGQTEALPTDESTTTTSTTTTTEKPSTTTSTS 536
                  .::.|.:|.:.....::..|                      .:.||......|.....
Zfish   341 ------LKLSQNLSVTEQRSFLLGYL----------------------VNDTTFPGPEGTVLLHF 377

  Fly   537 TTTTTPVPSTSKRTTTNAPLSTTNTPTTTTSSTTPSTTTTSSTSTTVIPTTTKANSIIEKDKELI 601
            ..|..|||.    ..:|...|.|.:...||.|........:......|..|.:...:........
Zfish   378 NVTVLPVPI----RFSNVTYSFTVSQKATTYSQIGKVCVENCQKFKGIDVTYQLEIVDRNITAEA 438

  Fly   602 RALGPALTREINIDDANNLIVFCNNTSDCGVTPRTQTQPSH----TTDSSPKILRTTVLT----- 657
            ::...|::...|.:| |..:::.|:|.   |..|.:.|...    ..:...|:...|.||     
Zfish   439 QSCYWAVSLAQNPND-NTGVLYVNDTK---VLRRPECQELEYVVIAQEQQNKLQAKTQLTVSFQG 499

  Fly   658 ---SIRSTVHPR---------------------PT---------STSTTTSTTTTAPPAVTAPSN 689
               |:: |..||                     ||         ....:...:|.:|...|.|..
Zfish   500 EADSLK-TDEPRFPACAEKRQRGDCEATRGLGAPTGRCQWRQGRDKGISKRYSTCSPNLGTCPDG 563

  Fly   690 EVYIGIVESSS-SASPADISSTVIAN--ERDL----------------------NMEMRRMNLVT 729
              |...:||.: |..|.|.||..|..  ||||                      ..|....|.:.
Zfish   564 --YCDAIESKNISICPQDCSSEAIIGGYERDLYGIKAGHGTCYCFEGKCFCERDEPEDDICNDMC 626

  Fly   730 LVLVAVGVIPLAAIILYLVRNFVIRRRAKQSEVFDVCITDQQPISPVKKVDSKYQVDDDEDEVDH 794
            ..::|.|:| |:.|:..|:.::.|.|..|.:           |..|:...:..::          
Zfish   627 KTVIATGII-LSFIVSVLLSSYFIHRYHKTT-----------PKPPIASAEMTFR---------- 669

  Fly   795 QHHQHMQHHQNHQNHQNHQHHQAMPMSQASQRDANHNRYGNNDDKTSLASEFH------------ 847
                              :..|:.|:|.::          ||..:.||.|..:            
Zfish   670 ------------------RPAQSYPISYSA----------NNVRRASLDSMENQVAIDTFKIPED 706

  Fly   848 ---DFERSNIRLKSLLGEGNFGQVWKAEADDLSGHFGATRIVAVKTIRACSAQVSLKD---EANI 906
               :|.|.|:.|...||||.||:|.||.|..|.|..|.| .||||.::..::...|:|   |..:
Zfish   707 PKWEFPRKNLVLGKTLGEGEFGKVVKATAFRLKGKAGYT-TVAVKMLKENASHSELRDLLSEFTL 770

  Fly   907 MRKLGSHQNVVTLLGACVESEPHMLIMEYAMRGRLLSLLRAARSA----------TNILPASVPG 961
            :::: :|.:|:.:.|||.:..|..||:|||..|.|.:.||.:|..          .|......|.
Zfish   771 LKQV-NHPHVIKMYGACSQDGPLYLIVEYAKYGSLRNFLRESRKVGPSYMGNDANRNSSYLENPD 834

  Fly   962 GRSLAPLSPRTLAGFALDIACGMEYIAGRRIVHRDLAARNVLLDHNGMCKICDFGMSIDLDAERM 1026
            .|:   |:...|..||..|:.||:|:|..::|||||||||||:......||.|||:|.|:..|  
Zfish   835 ERA---LTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEE-- 894

  Fly  1027 RKEQEKNAANDLMRHNAHKFKFDFGSRYILQHWQHTFGQGQGQGHCSKDQPHGEKKSHHGHDTIG 1091
                                     ..|:                         |:|        
Zfish   895 -------------------------DSYV-------------------------KRS-------- 901

  Fly  1092 KRHALPIRWMAPESLQYHMFTTETDIWAFGIVLWEIATLGSTPYSQLTGREVIRRVPQGLRPDLP 1156
             :..:|::|||.|||..|::||::|:|:||::||||.|||..||..:....:...:..|.|.:.|
Zfish   902 -KGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMEKP 965

  Fly  1157 KESRHEFYNLMSRCWHKEPHMRPSFAQSRLEITRSLHKWVDDDSAASDYMDVS 1209
            :....|.||||.|||.:|...||:|:....|:.:.:.|       :.||:|::
Zfish   966 ENCTDEMYNLMLRCWKQESDKRPTFSDISKELEKMMVK-------SRDYLDLA 1011

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TieNP_523928.1 TyrKc 854..1183 CDD:197581 110/341 (32%)
retNP_858048.2 RET_CLD1 23..140 CDD:465485 7/45 (16%)
CA 186..256 CDD:214520 16/92 (17%)
RET_CLD3 251..364 CDD:465516 25/195 (13%)
RET_CLD4 388..499 CDD:465517 21/114 (18%)
PTKc_RET 715..1004 CDD:173631 113/361 (31%)

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