DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tie and pdgfra

DIOPT Version :9

Sequence 1:NP_523928.1 Gene:Tie / 38559 FlyBaseID:FBgn0014073 Length:1233 Species:Drosophila melanogaster
Sequence 2:NP_001096290.1 Gene:pdgfra / 100124862 XenbaseID:XB-GENE-6072920 Length:1091 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TieNP_523928.1 TyrKc 854..1183 CDD:197581
PTKc 860..1187 CDD:270623
pdgfraNP_001096290.1 Ig_3 29..101 CDD:404760
Ig 215..313 CDD:416386
Ig strand A 215..219 CDD:409353
Ig strand A' 226..230 CDD:409353
Ig strand B 232..241 CDD:409353
Ig strand C 246..251 CDD:409353
Ig strand C' 254..256 CDD:409353
Ig strand D 260..268 CDD:409353
Ig strand E 272..280 CDD:409353
Ig strand F 290..296 CDD:409353
Ig strand G 301..307 CDD:409353
Ig 316..416 CDD:416386
PTKc_PDGFR_alpha 558..960 CDD:173653
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24416
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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