DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and CHRFAM7A

DIOPT Version :10

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_647536.1 Gene:CHRFAM7A / 89832 HGNCID:15781 Length:412 Species:Homo sapiens


Alignment Length:159 Identity:37/159 - (23%)
Similarity:49/159 - (30%) Gaps:77/159 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVVNVGA--------SSQSQLTKMVKKKPNQSRH------LLPSRLSSPSS-------------V 49
            ||.|.||        :...::||..  :.|...|      ||||.|...|.             :
Human   117 VVNNAGAIYPADLLSAKDEEITKTF--EVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGHGVI 179

  Fly    50 PHFVPSAVSRSAKVHGFFAS------KLGNTNLKLK-----FGNVMESRAGFFSSELPSHGFESG 103
            |:.:|...|:.|.| ||..:      .||.|.::..     |.|                     
Human   180 PYLIPYCSSKFAAV-GFHRALTAELDTLGKTGIQTSCLCPVFVN--------------------- 222

  Fly   104 GFTGFQK----RGW---------KSWING 119
              |||.|    |.|         :|.|||
Human   223 --TGFTKNPSTRLWPVLEPEEVARSLING 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:455710 37/159 (23%)
LGIC_ECD_nAChR_proto_beta-like 27..236 CDD:349833 30/136 (22%)
Cys-loop 152..166 CDD:349833
CHRFAM7ANP_647536.1 LIC <28..400 CDD:455710 37/159 (23%)
Blue background indicates that the domain is not in the aligned region.

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