Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476532.2 | Gene: | Chrna6 / 81721 | RGDID: | 69281 | Length: | 493 | Species: | Rattus norvegicus |
Alignment Length: | 494 | Identity: | 206/494 - (41%) |
---|---|---|---|
Similarity: | 312/494 - (63%) | Gaps: | 28/494 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 WLLCSILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQ 72
Fly 73 IMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPT 137
Fly 138 GEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTW 202
Fly 203 DIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEK 267
Fly 268 VTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHR 332
Fly 333 MPMYIRSIFLHYLPAFLFMKRP-RKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQS 396
Fly 397 KMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATEAVEFIAEHLRN 461
Fly 462 EDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM 500 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 206/492 (42%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 97/207 (47%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 99/255 (39%) | ||
Chrna6 | NP_476532.2 | LIC | 34..483 | CDD:273305 | 201/472 (43%) |
LGIC_ECD | 34..240 | CDD:355788 | 97/207 (47%) | ||
Cys-loop | 158..172 | CDD:349787 | 8/13 (62%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.920 |