Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_077811.1 | Gene: | Chrna1 / 79557 | RGDID: | 69277 | Length: | 457 | Species: | Rattus norvegicus |
Alignment Length: | 532 | Identity: | 191/532 - (35%) |
---|---|---|---|
Similarity: | 292/532 - (54%) | Gaps: | 101/532 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 LCSILVLVAF---SLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKN 71
Fly 72 QIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYP 136
Fly 137 TGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGT 201
Fly 202 WDIIEVPAYLN--VYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA 264
Fly 265 GEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPR 329
Fly 330 THRMPMYIRSIFLHYLPAFLF---MKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAI 391
Fly 392 GGKQSK---MEVMELSDL-----------HHPNCKINRKVNSGGELGLGDGCRRESESSDSILLS 442
Fly 443 PEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDAPHIFE 507
Fly 508 YVDQDRIIEIYR 519 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 188/511 (37%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 90/209 (43%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 89/271 (33%) | ||
Chrna1 | NP_077811.1 | LIC | 21..447 | CDD:273305 | 184/504 (37%) |
Neur_chan_LBD | 24..231 | CDD:280998 | 90/209 (43%) | ||
Neur_chan_memb | 238..446 | CDD:280999 | 89/272 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
6 | 5.880 |