DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta1 and Htr3a

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_006243083.1 Gene:Htr3a / 79246 RGDID:61818 Length:488 Species:Rattus norvegicus


Alignment Length:528 Identity:138/528 - (26%)
Similarity:239/528 - (45%) Gaps:89/528 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LCSILVLVAF---SLVSASEDEER------------LVR---DLFRGYNKLIRPVQNMTQKVGVR 56
            ||...||:|.   .|::..|...|            |:|   .|...|.|.:|||::..:...|.
  Rat     3 LCIPQVLLALFLSVLIAQGEGSRRRATQAHSTTQPALLRLSDHLLANYKKGVRPVRDWRKPTLVS 67

  Fly    57 FGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVL--FNN 119
            ..:....::||:||||::.:.:|.|..|.|..|||...|:..:..|.:|.|.:|.|||::  |.:
  Rat    68 IDVIMYAILNVDEKNQVLTTYIWYRQFWTDEFLQWTPEDFDNVTKLSIPTDSIWVPDILINEFVD 132

  Fly   120 ADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLAL 184
            ...:..:.|   |.::..|||....|....::|::|:..||||.|.|.:.|.||......::::|
  Rat   133 VGKSPSIPY---VYVHHQGEVQNYKPLQLVTACSLDIYNFPFDVQNCSLTFTSWLHTIQDINISL 194

  Fly   185 YNNKNFV--DLSDYWKSGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPT 247
            :.....|  |.|.:...|.|:::.|......:..:::: :..::.||::|||:.|||.|:|:||:
  Rat   195 WRTPEEVRSDKSIFINQGEWELLGVFTKFQEFSIETSN-SYAEMKFYVVIRRRPLFYAVSLLLPS 258

  Fly   248 VLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTV 312
            :.:..:.::.|.||.::||:|:..|::||...|||::||..||.|::..|||..|.:....:..:
  Rat   259 IFLMVVDIVGFCLPPDSGERVSFKITLLLGYSVFLIIVSDTLPATAIGTPLIGVYFVVCMALLVI 323

  Fly   313 SILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPS 377
            |:..|:.|:....:......:|.::|.:.|              .|:.|::.:....|...|..:
  Rat   324 SLAETIFIVQLVHKQDLQRPVPDWLRHLVL--------------DRIAWLLCLGEQPMAHRPPAT 374

  Fly   378 Y---------GS--PAELPKHISAIGGKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRR 431
            :         ||  || :..|.|.:|..|         ||                       .:
  Rat   375 FQANKTDDCSGSLLPA-MGNHCSHVGSPQ---------DL-----------------------EK 406

  Fly   432 ESESSDSILLSP-EASKAT----EAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVT 491
            .|.|.||.|..| |||.|.    :.:..|...|...|...:...||..|..|:|||...|:.:..
  Rat   407 TSRSRDSPLPPPREASLAVRGLLQELSSIRHSLEKRDEMREVARDWLRVGYVLDRLLFRIYLLAV 471

  Fly   492 TAGTVGIL 499
            .|.::.::
  Rat   472 LAYSITLV 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 138/528 (26%)
Neur_chan_LBD 28..236 CDD:280998 61/226 (27%)
Neur_chan_memb 243..498 CDD:280999 66/270 (24%)
Htr3aXP_006243083.1 LIC 5..482 CDD:273305 136/526 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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