Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006243083.1 | Gene: | Htr3a / 79246 | RGDID: | 61818 | Length: | 488 | Species: | Rattus norvegicus |
Alignment Length: | 528 | Identity: | 138/528 - (26%) |
---|---|---|---|
Similarity: | 239/528 - (45%) | Gaps: | 89/528 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 LCSILVLVAF---SLVSASEDEER------------LVR---DLFRGYNKLIRPVQNMTQKVGVR 56
Fly 57 FGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVL--FNN 119
Fly 120 ADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLAL 184
Fly 185 YNNKNFV--DLSDYWKSGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPT 247
Fly 248 VLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTV 312
Fly 313 SILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPS 377
Fly 378 Y---------GS--PAELPKHISAIGGKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRR 431
Fly 432 ESESSDSILLSP-EASKAT----EAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVT 491
Fly 492 TAGTVGIL 499 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 138/528 (26%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 61/226 (27%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 66/270 (24%) | ||
Htr3a | XP_006243083.1 | LIC | 5..482 | CDD:273305 | 136/526 (26%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |