Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001041528.1 | Gene: | chrna4b / 556619 | ZFINID: | ZDB-GENE-090505-3 | Length: | 627 | Species: | Danio rerio |
Alignment Length: | 613 | Identity: | 238/613 - (38%) |
---|---|---|---|
Similarity: | 326/613 - (53%) | Gaps: | 122/613 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 WLLCSILVLV-AFSLVSA-SEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEK 70
Fly 71 NQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIY 135
Fly 136 PTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSG 200
Fly 201 TWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAG 265
Fly 266 EKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRT 330
Fly 331 HRMPMYIRSIFLHYLPAFLFMKRPRKT------RLRWMMEMPGMSM------------PAHPHPS 377
Fly 378 YG--SPAE---------LPKHISAIGGKQSKMEVMELSDLHHP-------NCKINRKVNSGG--- 421
Fly 422 --------------------------------------ELGLGDG-------------------- 428
Fly 429 ---CRRE--------SESSDSIL----------LSPEASKATEAVEFIAEHLRNEDLYIQTREDW 472
Fly 473 KYVAMVIDRLQLYIFFIVTTAGTVGILM 500 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 238/611 (39%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 99/207 (48%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 125/372 (34%) | ||
chrna4b | NP_001041528.1 | Neur_chan_LBD | 31..237 | CDD:280998 | 99/207 (48%) |
Neur_chan_memb | 244..618 | CDD:280999 | 126/373 (34%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H592 | |
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |