Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062171.1 | Gene: | Chrnd / 54240 | RGDID: | 2352 | Length: | 517 | Species: | Rattus norvegicus |
Alignment Length: | 545 | Identity: | 192/545 - (35%) |
---|---|---|---|
Similarity: | 303/545 - (55%) | Gaps: | 80/545 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 9 LLCSILVLVAFSLVSASEDEERLVRDLF--RGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKN 71
Fly 72 QIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYP 136
Fly 137 TGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLAL----YNNKNF------V 191
Fly 192 DLSDYWKSGTWDIIEVPAYLNVYEGDSNHPTET----DITFYIIIRRKTLFYTVNLILPTVLISF 252
Fly 253 LCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVT 317
Fly 318 VIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPA 382
Fly 383 ELPKHISAIG---------GKQSKMEVM--ELSDLHHPNCKINRKVNSGGELGLGDGCRRESESS 436
Fly 437 DSIL--LSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGIL 499
Fly 500 MDAPH-----------IFEYVDQDR 513 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 187/519 (36%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 91/223 (41%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 86/267 (32%) | ||
Chrnd | NP_062171.1 | LIC | 23..476 | CDD:273305 | 179/488 (37%) |
Neur_chan_LBD | 25..246 | CDD:280998 | 91/223 (41%) | ||
Neur_chan_memb | 253..489 | CDD:280999 | 86/268 (32%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |