Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001074893.1 | Gene: | Chrna10 / 504186 | MGIID: | 3609260 | Length: | 447 | Species: | Mus musculus |
Alignment Length: | 491 | Identity: | 165/491 - (33%) |
---|---|---|---|
Similarity: | 245/491 - (49%) | Gaps: | 60/491 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 ILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKSN 77
Fly 78 VWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLW 142
Fly 143 VPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEV 207
Fly 208 PAYLNVYE-GDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLG 271
Fly 272 ISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMY 336
Fly 337 IRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEVM 401
Fly 402 ELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYI 466
Fly 467 QTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDA 502 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 163/487 (33%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 76/208 (37%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 81/254 (32%) | ||
Chrna10 | NP_001074893.1 | LGIC_ECD | 30..236 | CDD:355788 | 76/208 (37%) |
LGIC_TM_cation | 239..>324 | CDD:349853 | 41/85 (48%) | ||
TM1 helix | 239..261 | CDD:349853 | 11/21 (52%) | ||
Neur_chan_memb | 243..437 | CDD:367256 | 81/249 (33%) | ||
TM2 helix | 269..290 | CDD:349853 | 8/20 (40%) | ||
TM3 helix | 300..322 | CDD:349853 | 8/21 (38%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |