DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and pHCl-2

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster


Alignment Length:441 Identity:100/441 - (22%)
Similarity:147/441 - (33%) Gaps:141/441 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 VWKPDIVLFNNADGNYEVRYKSNVL----------IYPTGEVLW---VPPAIYQSSCTIDVTYFP 160
            :|.|.|.|.|        ...|.||          |||.|.||.   :...:|   |.::...||
  Fly   162 LWVPHIFLTN--------EQASTVLGTSAKDELTSIYPNGTVLTSTRLQATLY---CWMNFQKFP 215

  Fly   161 FDQQTCIMKFGSWTFNGDQVSL-----------------------ALYNNKNFVDLSDYWKSGTW 202
            ||:|.|.....||.:|...|.|                       :|||....|....|...|: 
  Fly   216 FDEQKCKTTLESWMYNTTLVQLHWETDNPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGS- 279

  Fly   203 DIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPA-EAGE 266
                       .||:     .:.|:|.:::.|:..:|.::..||:::|..:..:.|:|.| :...
  Fly   280 -----------LEGN-----YSIISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPA 328

  Fly   267 KVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFT-FIMNTVSILVTVIIINWNFRGPRT 330
            :.|||.:.|||.:...|.....|...|.|......:|:.| ||..:   ||....:|..:|  |.
  Fly   329 RTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGS---LVEFAFVNTIWR--RN 388

  Fly   331 HRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKH----ISAI 391
            :.:.:..|:  ..|:....|:                      ||        |.||    ....
  Fly   389 NDLQLKKRT--TKYIVKSTFV----------------------PH--------LKKHRRHGYRRT 421

  Fly   392 GGKQSKMEVMELSDLHHPN---CKINRKVNSGGELGLGDGC--------RRESESSDSILLSPEA 445
            ....|.|....:.....||   ..|...:..||.|...|..        ...||||||....|..
  Fly   422 DSTMSTMSTTSMDKTCGPNNTVITIETPIIIGGSLSREDSAISLDEQDETSTSESSDSSKEKPAQ 486

  Fly   446 SKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIF---FIVTTA 493
            :.||...                    |.|::.|||...::|   |||..|
  Fly   487 TFATMTP--------------------KEVSLWIDRKMRFVFPLSFIVFNA 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 100/441 (23%)
Neur_chan_LBD 28..236 CDD:280998 38/162 (23%)
Neur_chan_memb 243..498 CDD:280999 61/271 (23%)
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 100/441 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447282
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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