DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and nAChRbeta2

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster


Alignment Length:517 Identity:220/517 - (42%)
Similarity:316/517 - (61%) Gaps:49/517 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 WLLCSILVLVAFS------LVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLIN 66
            |.|..:.:||..:      ...|:.|.:||..||...||:|||||.|.|:.:.|..||...|||.
  Fly     4 WSLLCVFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIE 68

  Fly    67 VNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSN 131
            ||.|||:|.:|:|::..|:||:|:||..:|||:..|.:|.:.:|.|||||:||.||||||...:.
  Fly    69 VNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTK 133

  Fly   132 VLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYN---NKNFV-- 191
            ..:..||||.|.|||||:|||.::|.|||:|:|.|.|||||||:||.||.|...:   ..|.|  
  Fly   134 ATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQV 198

  Fly   192 --DLSDYWKSGTWDIIEVPAYLN-VYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFL 253
              ||::::.|..|||:||||..| .|..|:..|. :||||.:.:||||||||||||:|.|.::||
  Fly   199 GIDLTEFYLSVEWDILEVPATKNEEYYPDTLEPF-SDITFKLTMRRKTLFYTVNLIVPCVALTFL 262

  Fly   254 CVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTV 318
            .|||||||:::||||||.||||:||.||.||:::|:|||||.:||:.||||||.|:.::|:..||
  Fly   263 TVLVFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTV 327

  Fly   319 IIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAE 383
            .::|.:||.|.||.|...:|.:|||::|..:.|:|.:.|       :|... .:.|...|.:..:
  Fly   328 CVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRRTQYT-------LPDYD-DSTPSNGYTNEID 384

  Fly   384 LPKHISAIGGKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSIL---LSPEA 445
            :...||....        |..|               .:.|..|...:.|..||:::   |:||.
  Fly   385 VRDSISDFPS--------EFKD---------------SQDGAYDNGMQNSVDSDNVIPRNLTPEV 426

  Fly   446 SKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDAPHIFE 507
            .:|..||.|||:|:::.|...:..||||:|:||:||..|::|.:....||:.|:..:|.:::
  Fly   427 LQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFFLWLFTLSCVFGTLAIICQSPSLYD 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 219/508 (43%)
Neur_chan_LBD 28..236 CDD:280998 106/215 (49%)
Neur_chan_memb 243..498 CDD:280999 98/257 (38%)
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 216/501 (43%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 109/218 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447349
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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