Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_524482.1 | Gene: | nAChRalpha2 / 42919 | FlyBaseID: | FBgn0000039 | Length: | 576 | Species: | Drosophila melanogaster |
Alignment Length: | 560 | Identity: | 233/560 - (41%) |
---|---|---|---|
Similarity: | 322/560 - (57%) | Gaps: | 70/560 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 CKSWLLCSILVLVAF-SLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVN 68
Fly 69 EKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVL 133
Fly 134 IYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKN--------F 190
Fly 191 VDLSDYWKSGTWDIIEVPAYLNVYEGDSNHP----TETDITFYIIIRRKTLFYTVNLILPTVLIS 251
Fly 252 FLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILV 316
Fly 317 TVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPR------------------KTRLRWMM 363
Fly 364 EMPGMSMPAHPHPSYGSPAELPKHISAIG-GKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGD 427
Fly 428 GCRRESESSDSIL------LSP---------EASKATEAVEFIAEHLRNEDLYIQTREDWKYVAM 477
Fly 478 VIDRLQLYIFFIVTTAGTVGILMDAPHIFEYVDQDRIIEI 517 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 226/538 (42%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 103/219 (47%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 106/288 (37%) | ||
nAChRalpha2 | NP_524482.1 | LGIC_ECD_nAChR_proto_alpha-like | 44..263 | CDD:349832 | 106/222 (48%) |
LIC | 47..544 | CDD:273305 | 217/514 (42%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.920 |