DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and nAChRalpha2

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster


Alignment Length:560 Identity:233/560 - (41%)
Similarity:322/560 - (57%) Gaps:70/560 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CKSWLLCSILVLVAF-SLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVN 68
            ||.  ||.:|||:.. ..|.|:.|.:||..||...||:|||||.|.|..|.|:.||...|||::|
  Fly    23 CKP--LCLLLVLLLLCETVQANPDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLN 85

  Fly    69 EKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVL 133
            .|:||:.:||||...|.|::.:||.::|||:..|.:|.:.:|.|||||:|||||.|.|...:..:
  Fly    86 LKDQILTTNVWLEHEWQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGEYVVTTMTKAI 150

  Fly   134 IYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKN--------F 190
            ::.||:|:|.||||::|||.|||.|||||||||.|||||||::|||:.|...:.||        .
  Fly   151 LHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNKVEIG 215

  Fly   191 VDLSDYWKSGTWDIIEVPAYLNVYEGDSNHP----TETDITFYIIIRRKTLFYTVNLILPTVLIS 251
            :||.:|:.|..|||:.|||..:    :..:|    ...||.|.|.:||||||||||||:|.|.||
  Fly   216 IDLREYYPSVEWDILGVPAERH----EKYYPCCAEPYPDIFFNITLRRKTLFYTVNLIIPCVGIS 276

  Fly   252 FLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILV 316
            :|.||||||||::|||:.|.||||||..:|.||:|:|:|.|||.|||:.||||||.::..:|:::
  Fly   277 YLSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVGLSVVI 341

  Fly   317 TVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPR------------------KTRLRWMM 363
            |:||:|.::|.|.||:|..:|||.|:..||..|.|:.|:                  ||:....:
  Fly   342 TIIILNIHYRKPSTHKMRPWIRSFFIKRLPKLLLMRVPKDLLRDLAANKINYGLKFSKTKFGQAL 406

  Fly   364 EMPGMSMPAHPHPSYGSPAELPKHISAIG-GKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGD 427
             |..|.|    :....||..|.:....:| |..:.|         |.....||.....|.||.|.
  Fly   407 -MDEMQM----NSGGSSPDSLRRMQGRVGAGGCNGM---------HVTTATNRFSGLVGALGGGL 457

  Fly   428 GCRRESESSDSIL------LSP---------EASKATEAVEFIAEHLRNEDLYIQTREDWKYVAM 477
            ..........|:|      ||.         |..||...|.||..|::.:|.:....:||.:|||
  Fly   458 STLSGYNGLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFIQHHMQRQDEFNAEDQDWGFVAM 522

  Fly   478 VIDRLQLYIFFIVTTAGTVGILMDAPHIFEYVDQDRIIEI 517
            |:|||.|::|.|.:..||..||.:||.::   |..:.|::
  Fly   523 VMDRLFLWLFMIASLVGTFVILGEAPSLY---DDTKAIDV 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 226/538 (42%)
Neur_chan_LBD 28..236 CDD:280998 103/219 (47%)
Neur_chan_memb 243..498 CDD:280999 106/288 (37%)
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 106/222 (48%)
LIC 47..544 CDD:273305 217/514 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.920

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